Fish Single-cell RNA Database

GENE ID: ENSDARG00000027087

Symbol	Location	Gene type	Genome version	Species
tgfb2	16: 2745006 ~ 2807527 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000027087 (tgfb2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000012066	dcn	4: 16368762 ~ 16412084 (-)
ENSDARG00000053209	smad6a	7: 34182963 ~ 34192834 (-)
ENSDARG00000052142	acvr1bb	6: 2174082 ~ 2198683 (+)
ENSDARG00000099979	tgfbr3	6: 24398907 ~ 24598752 (+)
ENSDARG00000017494	tgfbr1a	2: 23856045 ~ 23931536 (-)
ENSDARG00000008191	tmeff1a	2: 42176922 ~ 42187118 (+)
ENSDARG00000055136	si:dkey-101k6.5	9: 38564900 ~ 38587275 (-)
ENSDARG00000040777	inhbb	9: 36967294 ~ 36974879 (+)
ENSDARG00000027087	tgfb2	16: 2745006 ~ 2807527 (-)
ENSDARG00000034541	tgfbr2b	16: 39505163 ~ 39605661 (-)
ENSDARG00000042934	ccn2a	20: 25340814 ~ 25343490 (+)
ENSDARG00000009134	hlx1	20: 52195525 ~ 52199311 (-)
ENSDARG00000042477	nr2c2	8: 53120278 ~ 53142068 (+)
ENSDARG00000010294	fmodb	8: 37489495 ~ 37495786 (+)
ENSDARG00000044059	lft2	17: 8308182 ~ 8312923 (-)
ENSDARG00000019367	tgfb3	17: 52059020 ~ 52091999 (-)
ENSDARG00000071879	tgfb5	14: 8770152 ~ 8795081 (-)
ENSDARG00000039273	fbln5	13: 33155428 ~ 33170733 (-)
ENSDARG00000059363	tgfbr2a	19: 917852 ~ 932264 (+)
ENSDARG00000018968	acvr1ba	23: 27800519 ~ 27822920 (-)
ENSDARG00000018179	acvrl1	23: 27835647 ~ 27857104 (-)
ENSDARG00000016858	smad7	21: 3419459 ~ 3452683 (-)
ENSDARG00000056740	tmeff1b	24: 33708804 ~ 33756003 (-)
ENSDARG00000042259	tgfbr1b	24: 119680 ~ 150447 (+)
ENSDARG00000012671	inhbaa	24: 3050020 ~ 3062610 (+)
--	ctgfb	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Chondrocytes (cluster: 16)	potential marker	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000027087

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences