Fish Single-cell RNA Database

GENE ID: ENSDARG00000038424

Symbol	Location	Gene type	Genome version	Species
c4b	16: 16665203 ~ 16701718 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000038424 (c4b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000103498	epd	5: 37837245 ~ 37839310 (+)
ENSDARG00000043002	vmo1a	3: 5403848 ~ 5413018 (-)
ENSDARG00000075648	sema5bb	6: 4033832 ~ 4146073 (+)
ENSDARG00000039517	c8b	2: 1478225 ~ 1518360 (-)
ENSDARG00000039516	c8a	2: 1486822 ~ 1499584 (+)
ENSDARG00000096523	si:ch73-94k4.5	1: 57151926 ~ 57160654 (+)
ENSDARG00000096671	si:dkey-27j5.10	1: 57132140 ~ 57236167 (+)
ENSDARG00000096534	si:dkey-27j5.10	1: 57218301 ~ 57224222 (+)
ENSDARG00000068261	pros1	1: 343292 ~ 354166 (-)
ENSDARG00000089237	vsig10l	16: 50183190 ~ 50203058 (-)
ENSDARG00000038424	c4b	16: 16665203 ~ 16701718 (-)
ENSDARG00000100599	c1s	16: 31676281 ~ 31686602 (-)
ENSDARG00000102094	wu:fd46c06	16: 31658196 ~ 31661536 (-)
ENSDARG00000078114	si:ch73-237c6.1	8: 23689992 ~ 23701880 (-)
ENSDARG00000094451	cfp	8: 23672254 ~ 23702295 (-)
ENSDARG00000039579	cfd	13: 13681681 ~ 13684334 (+)
ENSDARG00000092858	si:ch1073-126c3.2	13: 20535159 ~ 20540790 (-)
ENSDARG00000019492	shbg	12: 22511015 ~ 22524388 (-)
ENSDARG00000001558	kifc1	19: 6990970 ~ 7000603 (+)
ENSDARG00000102004	apoea	19: 10855158 ~ 10859694 (+)
ENSDARG00000068726	masp1	15: 36187434 ~ 36223417 (+)
ENSDARG00000007988	masp2	23: 28770225 ~ 28796157 (+)
ENSDARG00000056075	rca2.1	23: 26094481 ~ 26120281 (-)
ENSDARG00000095512	rca2.2	23: 26125676 ~ 26128664 (-)
ENSDARG00000045299	vmo1b	21: 1618181 ~ 1625976 (-)
ENSDARG00000090730	cfbl	21: 27448856 ~ 27461206 (+)
ENSDARG00000055539	epdl2	21: 28513057 ~ 28523548 (-)
ENSDARG00000092419	vtg7	22: 24851227 ~ 24858050 (-)
ENSDARG00000055809	vtg2	22: 24869690 ~ 24880824 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Fibroblasts (cluster: 6)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Fibroblasts (cluster: 5)	potential marker	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Fibroblasts (cluster: 6)	potential marker	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	Stromal (cluster: 4)	potential marker	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Stromal (cluster: 1)	potential marker	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000038424

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences