Fish Single-cell RNA Database

GENE ID: ENSDARG00000042829

Symbol	Location	Gene type	Genome version	Species
si:dkey-30j22.1	20: 35576739 ~ 35706379 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042829 (si:dkey-30j22.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069692	col7a1l	4: 15889437 ~ 15966260 (+)
ENSDARG00000092064	si:dkey-117n7.4	4: 15954293 ~ 15964030 (+)
ENSDARG00000089640	si:dkey-117n7.5	4: 15968483 ~ 15974910 (+)
ENSDARG00000076302	dtx4a	7: 18557939 ~ 18601206 (-)
ENSDARG00000032933	dtx2	5: 59553636 ~ 59595597 (+)
ENSDARG00000092567	si:dkey-61l1.4	5: 29199292 ~ 29238889 (-)
ENSDARG00000069438	neurl1aa	1: 47701924 ~ 47771742 (-)
ENSDARG00000078016	dtx4b	1: 41498188 ~ 41530541 (+)
ENSDARG00000079255	zgc:174935	16: 17711215 ~ 17713859 (-)
ENSDARG00000024537	emilin1a	20: 34845672 ~ 34865031 (+)
ENSDARG00000042829	si:dkey-30j22.1	20: 35576739 ~ 35706379 (-)
ENSDARG00000019601	col12a1b	20: 49451764 ~ 49681850 (-)
ENSDARG00000093093	adam17b	20: 29586529 ~ 29613629 (+)
ENSDARG00000043697	nefmb	8: 6863462 ~ 6866890 (+)
ENSDARG00000043213	adam17a	17: 35247497 ~ 35279422 (-)
ENSDARG00000061773	neurl1ab	17: 20500229 ~ 20518626 (+)
ENSDARG00000099694	neurl1b	14: 15662563 ~ 15740090 (-)
ENSDARG00000076466	maml1	14: 16382507 ~ 16423203 (-)
ENSDARG00000007912	si:ch211-196i2.1	21: 14253404 ~ 14310159 (-)
ENSDARG00000015502	adam10b	25: 150570 ~ 160547 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Periderm cells (cluster: 16)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Periderm cells (cluster: 16)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NCC ionocytes (cluster: 1)	potential marker	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Neuronal progenitor (cluster: 4)	potential marker	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Endothelium (cluster: 7)	potential marker	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	Endothelium (cluster: 7)	potential marker	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	Gills (cluster: 13)	potential marker	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Gills (cluster: 8)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000042829

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences