Fish Single-cell RNA Database

GENE ID: ENSDARG00000060609

Symbol	Location	Gene type	Genome version	Species
cd109	20: 49119633 ~ 49175503 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000060609 (cd109), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000052905	zgc:165423	3: 39540014 ~ 39550089 (+)
ENSDARG00000003900	gpr61l	6: 42031836 ~ 42036685 (-)
ENSDARG00000076183	frrs1a	2: 20444477 ~ 20470140 (-)
ENSDARG00000094524	si:ch211-1f22.11	1: 56972616 ~ 56981521 (+)
ENSDARG00000036545	tmprss3b	1: 46948010 ~ 46957351 (+)
ENSDARG00000017984	zgc:172106	1: 55293424 ~ 55299173 (+)
ENSDARG00000096625	si:ch211-286b5.8	1: 55304374 ~ 55310703 (+)
ENSDARG00000061830	prss12	1: 20069535 ~ 20141844 (+)
ENSDARG00000096656	si:ch211-1f22.6	1: 56852400 ~ 56857465 (+)
ENSDARG00000034910	si:ch211-152f2.2	1: 56873359 ~ 56878634 (+)
ENSDARG00000096507	si:ch211-1f22.8	1: 56886214 ~ 56893355 (+)
ENSDARG00000053315	tmprss3a	9: 19550367 ~ 19585848 (-)
ENSDARG00000060753	pear1	16: 30438041 ~ 30520157 (+)
ENSDARG00000100599	c1s	16: 31676281 ~ 31686602 (-)
ENSDARG00000043019	exoc1	20: 25853012 ~ 25878607 (-)
ENSDARG00000060609	cd109	20: 49119633 ~ 49175503 (+)
ENSDARG00000002021	pygb	17: 21126495 ~ 21152173 (+)
ENSDARG00000012271	pacc1	17: 45378908 ~ 45387134 (-)
ENSDARG00000030967	si:ch211-51a6.2	13: 21779975 ~ 21822894 (+)
ENSDARG00000060680	si:ch73-127m5.1	12: 35119762 ~ 35194800 (+)
ENSDARG00000063444	si:dkey-32n7.7	12: 4170921 ~ 4185554 (-)
ENSDARG00000069603	taok1a	15: 25588357 ~ 25629046 (-)
ENSDARG00000097802	si:dkey-238d18.12	15: 37950556 ~ 37951733 (+)
ENSDARG00000037527	si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)
ENSDARG00000012496	NA	11: 36231248 ~ 36237676 (+)
ENSDARG00000098683	zmiz2	10: 45248326 ~ 45341821 (+)
ENSDARG00000077605	frrs1b	24: 29912509 ~ 29930754 (+)
ENSDARG00000032037	bet1l	25: 7667634 ~ 7670655 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000060609

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences