Fish Single-cell RNA Database

GENE ID: ENSDARG00000005780

Symbol	Location	Gene type	Genome version	Species
npy8br	8: 51634803 ~ 51635930 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000005780 (npy8br), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053449	pyya	3: 33340939 ~ 33344780 (+)
ENSDARG00000003818	prkag1	6: 2206495 ~ 2222707 (-)
ENSDARG00000005058	ncapd2	2: 44749201 ~ 44777679 (-)
ENSDARG00000093401	crha	2: 42112503 ~ 42114036 (+)
ENSDARG00000037411	npy1r	1: 21242836 ~ 21297748 (-)
ENSDARG00000070543	grin2ab	1: 8763429 ~ 8928841 (-)
ENSDARG00000089943	npy2rl	1: 10221568 ~ 10235337 (+)
ENSDARG00000011066	glra3	1: 38416106 ~ 38538284 (-)
ENSDARG00000054946	mc5rb	16: 30582989 ~ 30584279 (-)
ENSDARG00000088452	si:dkey-24i24.3	16: 28728347 ~ 28737174 (+)
ENSDARG00000052336	ociad2	20: 23238833 ~ 23244193 (+)
ENSDARG00000059763	gabrd	8: 53185079 ~ 53198154 (-)
ENSDARG00000005780	npy8br	8: 51634803 ~ 51635930 (-)
ENSDARG00000077120	arid5a	8: 52377516 ~ 52403265 (+)
ENSDARG00000038508	chrnb3b	14: 41518257 ~ 41530140 (+)
ENSDARG00000076703	zfand4	13: 18019709 ~ 18069421 (-)
ENSDARG00000062532	washc2c	13: 18073211 ~ 18122333 (-)
ENSDARG00000037196	arid5b	12: 8168272 ~ 8385702 (+)
ENSDARG00000035832	pyyb	12: 10304435 ~ 10315039 (-)
ENSDARG00000036816	pou2f2a	19: 6213680 ~ 6303099 (-)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000031348	mc5ra	19: 12762887 ~ 12803408 (+)
ENSDARG00000070930	cart1	22: 36832648 ~ 36836085 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Chondrocranium cells (cluster: 35)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000005780

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences