Fish Single-cell RNA Database

GENE ID: ENSDARG00000052960

Symbol	Location	Gene type	Genome version	Species
nppa	8: 48613040 ~ 48617664 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000052960 (nppa), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000024894	tbx5a	5: 72264192 ~ 72289648 (-)
ENSDARG00000002216	tbx3a	5: 72316803 ~ 72324371 (-)
ENSDARG00000035253	npr3	5: 41260478 ~ 41307550 (-)
ENSDARG00000020187	NA	6: 13993500 ~ 14010554 (-)
ENSDARG00000079564	myh7	2: 24252987 ~ 24270062 (-)
ENSDARG00000005150	tbx20	16: 42509011 ~ 42523744 (-)
ENSDARG00000095848	si:dkey-239n17.6	16: 28903774 ~ 28908989 (+)
ENSDARG00000018750	npr1b	16: 28908478 ~ 28991376 (+)
ENSDARG00000098952	gata4	20: 52952116 ~ 52967878 (-)
ENSDARG00000090637	myh6	20: 53577502 ~ 53583436 (+)
ENSDARG00000019096	myl7	8: 40457107 ~ 40464935 (-)
ENSDARG00000052948	nppal	8: 48603398 ~ 48604351 (+)
ENSDARG00000052958	nppb	8: 48609521 ~ 48610544 (+)
ENSDARG00000052960	nppa	8: 48613040 ~ 48617664 (+)
ENSDARG00000018004	nkx2.5	14: 24241241 ~ 24244034 (+)
ENSDARG00000102867	srfb	13: 51909828 ~ 51922290 (-)
ENSDARG00000061685	hcn4	18: 1004814 ~ 1143998 (-)
ENSDARG00000042559	tnni1c	18: 6625348 ~ 6634424 (-)
ENSDARG00000031751	npr1a	19: 26423590 ~ 26629117 (+)
ENSDARG00000006120	tbx2b	15: 27364394 ~ 27371340 (+)
ENSDARG00000075713	shox2	15: 2182103 ~ 2188422 (-)
ENSDARG00000116713	si:ch73-265d7.2	23: 44633858 ~ 44642913 (+)
ENSDARG00000029764	mef2ca	10: 43544814 ~ 43655449 (-)
ENSDARG00000114031	smyhc3	24: 40712794 ~ 40726073 (-)
ENSDARG00000068126	nppc	22: 38614887 ~ 38621438 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Differentiated art.CMs (cluster: 2)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Heart primordium (cluster: 30)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	Heart primordium (cluster: 10)	potential marker	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	Heart primordium (cluster: 7)	potential marker	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Heart primordium (cluster: 5)	potential marker	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Heart primordium (cluster: 4)	potential marker	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Cardiomyocytes (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000052960

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences