Fish Single-cell RNA Database

GENE ID: ENSDARG00000042552

Symbol	Location	Gene type	Genome version	Species
cacna1sb	8: 25767610 ~ 25808403 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042552 (cacna1sb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000099045	cacnb2a	7: 71792290 ~ 71837265 (-)
ENSDARG00000024141	cav3	6: 41996066 ~ 42003780 (-)
ENSDARG00000003754	tspan2a	6: 49107048 ~ 49159207 (-)
ENSDARG00000011023	pdlim3a	1: 17721853 ~ 17735861 (-)
ENSDARG00000098883	stac3	9: 307863 ~ 321351 (+)
ENSDARG00000071331	ryr3	20: 29268444 ~ 29420713 (-)
ENSDARG00000019990	cabp1a	8: 39890186 ~ 39952727 (-)
ENSDARG00000038618	cpt2	8: 21137446 ~ 21142602 (-)
ENSDARG00000056774	gpr37l1b	8: 21265263 ~ 21268303 (-)
ENSDARG00000042552	cacna1sb	8: 25767610 ~ 25808403 (+)
ENSDARG00000014248	pdlim3b	14: 29782508 ~ 29800107 (-)
ENSDARG00000004931	slc8a3	13: 36196778 ~ 36264861 (-)
ENSDARG00000061796	rasgrp4	18: 35742838 ~ 35802483 (+)
ENSDARG00000033029	pkd1b	12: 21697540 ~ 21748008 (+)
ENSDARG00000113525	fgf12b	15: 45414883 ~ 45510977 (-)
ENSDARG00000059202	tspan2b	23: 423351 ~ 452365 (-)
ENSDARG00000076030	cacnb3b	23: 26946429 ~ 26959206 (+)
ENSDARG00000029510	timm17a	11: 24900123 ~ 24906264 (+)
ENSDARG00000033411	cabp1b	10: 41409255 ~ 41450454 (-)
ENSDARG00000011422	ryr1a	10: 33406819 ~ 33540336 (+)
ENSDARG00000030250	dennd2db	22: 835728 ~ 856886 (+)
ENSDARG00000044526	camk1ga	22: 1049367 ~ 1069407 (+)
ENSDARG00000059347	calml4b	25: 1266945 ~ 1323928 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 17)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 15) Skeletal muscle cells (cluster: 19)	potential marker potential marker	NA NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000042552

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences