Fish Single-cell RNA Database

GENE ID: ENSDARG00000016161

Symbol	Location	Gene type	Genome version	Species
ccdc170	17: 7821890 ~ 7842209 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000016161 (ccdc170), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000056152	fam3c	4: 20101992 ~ 20108833 (-)
ENSDARG00000033418	gpatch1	7: 38265363 ~ 38277255 (+)
ENSDARG00000077162	nwd2	7: 61050329 ~ 61177064 (+)
ENSDARG00000035563	znf703	5: 24329983 ~ 24333684 (-)
ENSDARG00000074671	nptx1l	3: 59453467 ~ 59472422 (-)
ENSDARG00000020232	eif6	6: 52339548 ~ 52348651 (-)
ENSDARG00000091408	mtcl1	2: 54482603 ~ 54509065 (+)
ENSDARG00000105258	cep72	16: 52847079 ~ 52864785 (+)
ENSDARG00000055676	armt1	20: 26387179 ~ 26391958 (-)
ENSDARG00000043550	NA	8: 2438638 ~ 2454525 (+)
ENSDARG00000078155	inavaa	8: 23753273 ~ 23776399 (-)
ENSDARG00000027465	rmnd1	17: 7795559 ~ 7818991 (-)
ENSDARG00000016161	ccdc170	17: 7821890 ~ 7842209 (+)
ENSDARG00000088255	smoc1	17: 48314724 ~ 48368231 (+)
ENSDARG00000060005	mtrf1l	13: 46927350 ~ 46937057 (+)
ENSDARG00000071406	tepsin	12: 34827808 ~ 34842512 (+)
ENSDARG00000070571	inavab	11: 24716837 ~ 24756816 (+)
ENSDARG00000069157	tmem135	10: 25312337 ~ 25328814 (-)
--	zgc:92873	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Neuronal progenitor (cluster: 16)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000016161

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences