Fish Single-cell RNA Database

GENE ID: ENSDARG00000103933

Symbol	Location	Gene type	Genome version	Species
fancm	17: 691453 ~ 702817 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000103933 (fancm), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069326	mus81	7: 19850889 ~ 19883099 (+)
ENSDARG00000027586	top3b	5: 13211452 ~ 13251907 (-)
ENSDARG00000024967	fancg	5: 41496490 ~ 41509339 (+)
ENSDARG00000052827	top3a	3: 40235288 ~ 40254634 (-)
ENSDARG00000089291	cenpx	3: 57825938 ~ 57830023 (+)
ENSDARG00000053574	fancd2	6: 42291308 ~ 42336995 (-)
ENSDARG00000070485	cenps	6: 45934682 ~ 45937000 (+)
ENSDARG00000056414	usp1	6: 32394502 ~ 32411727 (-)
ENSDARG00000038543	wdr48b	2: 49805892 ~ 49834052 (+)
ENSDARG00000012325	zgc:110269	2: 16449627 ~ 16458472 (+)
ENSDARG00000044923	ube2w	2: 30193747 ~ 30200206 (-)
ENSDARG00000031680	ercc1	9: 32674676 ~ 32684008 (-)
ENSDARG00000067596	fancb	9: 54946499 ~ 54981471 (-)
ENSDARG00000075915	si:ch73-70k4.1	8: 17529151 ~ 17535031 (+)
ENSDARG00000008472	apex2	8: 22509508 ~ 22515042 (-)
ENSDARG00000068870	fance	8: 23731483 ~ 23737370 (+)
ENSDARG00000055232	fancc	8: 30112624 ~ 30156117 (+)
ENSDARG00000041376	rmi1	8: 49766338 ~ 49769987 (+)
ENSDARG00000068833	dclre1b	8: 24107030 ~ 24113604 (-)
ENSDARG00000103933	fancm	17: 691453 ~ 702817 (+)
ENSDARG00000007885	fancl	13: 26703897 ~ 26780797 (+)
ENSDARG00000062269	fan1	18: 21686115 ~ 21725805 (-)
ENSDARG00000079457	faap100	12: 26538861 ~ 26547248 (+)
ENSDARG00000076913	eme1	12: 21669385 ~ 21684255 (-)
ENSDARG00000077900	si:ch211-141o9.10	12: 19272963 ~ 19282187 (-)
ENSDARG00000077516	recql4	19: 2752933 ~ 2822372 (-)
ENSDARG00000063285	ube2t	23: 5104743 ~ 5108055 (+)
ENSDARG00000025421	tdrd3	11: 42726712 ~ 42819730 (+)
ENSDARG00000051731	faap24	25: 36287745 ~ 36292346 (-)
ENSDARG00000019250	fancf	25: 35294670 ~ 35296165 (-)
ENSDARG00000026224	fanci	25: 8447565 ~ 8479171 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000103933

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences