Fish Single-cell RNA Database

GENE ID: ENSDARG00000008796

Symbol	Location	Gene type	Genome version	Species
her5	14: 30543008 ~ 30544666 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000008796 (her5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000070546	msgn1	4: 306036 ~ 308006 (+)
ENSDARG00000026599	en2a	7: 40988901 ~ 40993456 (-)
ENSDARG00000017078	mespaa	7: 15308042 ~ 15333427 (+)
ENSDARG00000037879	lfng	3: 41917499 ~ 41926869 (+)
ENSDARG00000038868	en2b	2: 29976419 ~ 29979956 (+)
ENSDARG00000056400	helt	1: 17593392 ~ 17595045 (+)
ENSDARG00000088881	si:dkeyp-69b9.3	16: 13505064 ~ 13516745 (-)
ENSDARG00000013441	hey2	20: 39588897 ~ 39596338 (-)
ENSDARG00000007329	tbx16	8: 51733907 ~ 51753604 (-)
ENSDARG00000087601	gpr153	8: 46656170 ~ 46700278 (-)
ENSDARG00000008796	her5	14: 30543008 ~ 30544666 (+)
ENSDARG00000061375	sgpl1	13: 25725547 ~ 25750910 (-)
ENSDARG00000105255	zbtb4	12: 22528750 ~ 22540943 (-)
ENSDARG00000055798	heyl	19: 32553874 ~ 32560591 (+)
ENSDARG00000007097	her13	15: 7187228 ~ 7190183 (+)
ENSDARG00000088398	tmem107l	23: 28482780 ~ 28487153 (-)
ENSDARG00000073781	si:dkey-17e16.9	21: 25544882 ~ 25555355 (-)
ENSDARG00000038205	her2	11: 41966117 ~ 41966854 (-)
ENSDARG00000054562	her15.1	11: 41981959 ~ 41984487 (+)
ENSDARG00000043126	blf	22: 9917007 ~ 9923692 (+)
ENSDARG00000068761	mespab	25: 11015417 ~ 11016675 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	Midbrain (cluster: 2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	Midbrain (cluster: 8)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000008796

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences