Fish Single-cell RNA Database

GENE ID: ENSDARG00000071429

Symbol	Location	Gene type	Genome version	Species
tdo2a	14: 36738063 ~ 36750593 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000071429 (tdo2a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000013050	abcc12	7: 38158604 ~ 38183331 (-)
ENSDARG00000036082	tph1b	7: 33106332 ~ 33114884 (-)
ENSDARG00000018351	hpda	5: 2815021 ~ 2852285 (+)
ENSDARG00000046092	si:ch211-283g2.3	5: 4232196 ~ 4245186 (-)
ENSDARG00000099546	kynu	6: 612330 ~ 627846 (+)
ENSDARG00000020427	nceh1a	2: 25131349 ~ 25143373 (-)
ENSDARG00000021433	asmtl	9: 34872733 ~ 34882516 (-)
ENSDARG00000016494	ddc	16: 8298542 ~ 8342749 (-)
ENSDARG00000041787	cx32.3	20: 40753518 ~ 40755614 (-)
ENSDARG00000033594	ido1	8: 50463227 ~ 50482781 (-)
ENSDARG00000071429	tdo2a	14: 36738063 ~ 36750593 (+)
ENSDARG00000076487	haao	13: 8954667 ~ 8982782 (+)
ENSDARG00000009160	kmo	13: 42272515 ~ 42306348 (-)
ENSDARG00000057239	tph2	18: 16989764 ~ 17001056 (-)
ENSDARG00000069630	tat	18: 13162728 ~ 13179510 (+)
ENSDARG00000019492	shbg	12: 22511015 ~ 22524388 (-)
ENSDARG00000031616	g6pca.1	12: 6023490 ~ 6033854 (-)
ENSDARG00000035882	rida	19: 32822269 ~ 32884513 (+)
ENSDARG00000056804	si:dkey-40g16.6	15: 21694388 ~ 21702317 (-)
ENSDARG00000095963	asgrl2	23: 44881020 ~ 44894125 (+)
ENSDARG00000044802	aadacl4	11: 28617564 ~ 28619811 (+)
ENSDARG00000099106	afmid	11: 45139300 ~ 45153006 (-)
ENSDARG00000023176	tdo2b	11: 34084532 ~ 34097437 (-)
ENSDARG00000062087	nceh1b.1	24: 26895748 ~ 26902697 (+)
ENSDARG00000029432	tph1a	25: 8139220 ~ 8160030 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	Hepatocytes (cluster: 2)	potential marker	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000071429

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences