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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| CR383676.1 | 14: 45631180 ~ 45631235 (-) | sRNA | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) |
Ectoderm cells (cluster: 1) |
marker |
DOI:10.1038/s41467-021-23834-1 |
|
| GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Osteoblast (cluster: 3) |
potential marker |
NA |
|
| GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) |
Ectoderm cells (cluster: 2) |
potential marker |
NA |
|
| GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells |
Differentiated art.CMs (cluster: 2) More-differentiated SHFPs (cluster: 3) Less-differentiated SHFPs (cluster: 4) Endothelium (cluster: 8) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
| GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells |
More-differentiated SHFPs (cluster: 3) Differentiated art.ventricle (cluster: 4) Less-differentiated SHFPs (cluster: 5) Proliferative SHFPs (cluster: 9) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
| GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum |
Epithelialized macrophages (cluster: 12) |
potential marker |
NA |
|
| GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC |
Immune cells (cluster: 4) |
potential marker |
NA |
|
| GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 |
Corticotropes (cluster: 7) |
potential marker |
NA |
|
| GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis |
Somatolactotropes (cluster: 1) Prop1+ group (cluster: 11) |
potential marker potential marker |
NA NA |
|
| GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
Rod opsin (cluster: 2) Blue cone opsin (cluster: 3) |
potential marker potential marker |
NA NA |
|
| GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Muller glia cells (cluster: 5) |
potential marker |
NA |
|
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment |
Muller glia cells (cluster: 4) Bipolar cells (cluster: 5) Retinal ganglion cells (cluster: 6) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment |
Retinal ganglion cells (cluster: 5) Bipolar cells (cluster: 6) |
potential marker potential marker |
NA NA |
|
| GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment |
Bipolar cells (cluster: 2) Photoreceptor cells (cluster: 5) Retinal ganglion cells (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment |
Bipolar cells (cluster: 1) Bipolar cells (cluster: 1) |
potential marker potential marker |
NA NA |
|
| GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment |
Floor plate (cluster: 13) Spinal cord (cluster: 2) Neuron (cluster: 6) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Epidermal cells (cluster: 7) |
potential marker |
NA |
|
| GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT |
Multipotent cells (cluster: 1) |
potential marker |
NA |
|
| GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT |
Multipotent cells (cluster: 3) Neuron (cluster: 8) |
potential marker potential marker |
NA NA |
|
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Multipotent cells (cluster: 3) |
potential marker |
NA |
|
| GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type | ||||
| GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant | ||||
| GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
| GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC | ||||
| GSE137784 (no HCC) | liver | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC | ||||
| GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- |