Fish Single-cell RNA Database

GENE ID: ENSDARG00000003965

Symbol	Location	Gene type	Genome version	Species
tlx1	13: 28267997 ~ 28272299 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000003965 (tlx1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000074319	sall1a	7: 37359004 ~ 37392172 (+)
ENSDARG00000034504	lmo1	7: 28109364 ~ 28148310 (-)
ENSDARG00000014479	ptf1a	2: 29710857 ~ 29711761 (+)
ENSDARG00000060501	dpcd	1: 31654203 ~ 31657854 (-)
ENSDARG00000078701	prdm13	16: 32749591 ~ 32755900 (+)
ENSDARG00000089032	si:ch211-154o6.2	16: 21673723 ~ 21692024 (-)
ENSDARG00000043210	nfic	8: 20624510 ~ 20795631 (+)
ENSDARG00000004046	phf6	14: 31488579 ~ 31507744 (+)
ENSDARG00000056794	arl3a	13: 11963789 ~ 11971161 (-)
ENSDARG00000039304	six1a	13: 31619961 ~ 31622195 (-)
ENSDARG00000003965	tlx1	13: 28267997 ~ 28272299 (-)
ENSDARG00000075245	wdr11	13: 2732951 ~ 2828218 (+)
ENSDARG00000028148	pax2a	13: 29770837 ~ 29805529 (+)
ENSDARG00000032578	pax2b	12: 45799982 ~ 45876387 (-)
ENSDARG00000054878	six2b	12: 25610019 ~ 25612170 (-)
ENSDARG00000001015	znf384l	19: 6960388 ~ 6988866 (-)
ENSDARG00000014018	lhx1a	15: 27703409 ~ 27710575 (-)
ENSDARG00000101523	arxb	21: 40670996 ~ 40676224 (-)
ENSDARG00000014259	eya1	24: 13869092 ~ 14015459 (+)
ENSDARG00000078962	duox2	25: 31944165 ~ 31953516 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	Epithelial cells (cluster: 7)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (1.25dpf)	embryo	baseline	1.25dpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000003965

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences