Fish Single-cell RNA Database

GENE ID: ENSDARG00000088740

Symbol	Location	Gene type	Genome version	Species
hmgcll1	13: 1928361 ~ 1981727 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000088740 (hmgcll1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000012468	aacs	5: 18827314 ~ 18897482 (-)
ENSDARG00000067656	kcmf1	5: 55719757 ~ 55752169 (-)
ENSDARG00000005359	sucla2	6: 10037252 ~ 10056640 (+)
ENSDARG00000053518	adhfe1	2: 42095487 ~ 42109575 (-)
ENSDARG00000052696	bdh2	1: 43714149 ~ 43727576 (-)
ENSDARG00000007127	acat2	20: 30922595 ~ 30931146 (-)
ENSDARG00000016607	echdc2	20: 16205080 ~ 16223245 (-)
ENSDARG00000102055	hadhb	20: 47927720 ~ 47953524 (-)
ENSDARG00000038881	acaa2	8: 2509625 ~ 2529878 (-)
ENSDARG00000013063	oxct1a	8: 31716872 ~ 31818916 (+)
ENSDARG00000038969	zgc:113142	17: 51627209 ~ 51638206 (+)
ENSDARG00000038834	etfdh	14: 48070872 ~ 48103207 (-)
ENSDARG00000088740	hmgcll1	13: 1928361 ~ 1981727 (+)
ENSDARG00000089709	gfral	13: 1990970 ~ 2010259 (-)
ENSDARG00000030945	si:ch211-259g3.4	15: 16122984 ~ 16177603 (-)
ENSDARG00000054136	ccdc105	15: 34988148 ~ 35000993 (+)
ENSDARG00000054319	oxct1b	21: 20771082 ~ 20785888 (+)
ENSDARG00000103251	sh3pxd2b	21: 42717424 ~ 42780082 (+)
ENSDARG00000044914	suclg2	11: 16738179 ~ 16975190 (-)
ENSDARG00000042975	auh	10: 5422575 ~ 5475690 (+)
ENSDARG00000103025	hmgcs1	10: 6010570 ~ 6034397 (+)
ENSDARG00000069601	snx30	10: 4940767 ~ 4961929 (-)
ENSDARG00000045888	acat1	10: 38663917 ~ 38698966 (+)
ENSDARG00000059388	bdh1	24: 3328354 ~ 3336400 (+)
ENSDARG00000004687	acaa1	24: 20325312 ~ 20332460 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000088740

EXPRESSION

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