Fish Single-cell RNA Database

GENE ID: ENSDARG00000074442

Symbol	Location	Gene type	Genome version	Species
alx4b	18: 38321039 ~ 38364462 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000074442 (alx4b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000098745	tfec	4: 6032640 ~ 6047236 (+)
ENSDARG00000036499	zgc:162171	7: 23865336 ~ 23873173 (-)
ENSDARG00000037879	lfng	3: 41917499 ~ 41926869 (+)
ENSDARG00000058699	tmeff2b	6: 8756177 ~ 8865543 (-)
ENSDARG00000091481	foxc1a	2: 686873 ~ 689047 (-)
ENSDARG00000087290	si:ch211-202h22.10	1: 54606354 ~ 54608032 (+)
ENSDARG00000041998	zgc:113337	9: 9322424 ~ 9348058 (-)
ENSDARG00000056029	cyp26c1	17: 19522856 ~ 19535328 (-)
ENSDARG00000070670	crip2	17: 37445525 ~ 37474689 (-)
ENSDARG00000025912	bscl2l	14: 6159162 ~ 6175947 (+)
ENSDARG00000074442	alx4b	18: 38321039 ~ 38364462 (+)
ENSDARG00000062688	gpnmb	19: 20247435 ~ 20270207 (-)
ENSDARG00000069495	tmem179b	21: 25664393 ~ 25669820 (-)
ENSDARG00000075161	defbl1	21: 21741804 ~ 21742991 (+)
ENSDARG00000056028	slc22a7a	11: 30729745 ~ 30742966 (+)
ENSDARG00000032705	foxg1b	11: 43114108 ~ 43116249 (+)
ENSDARG00000087639	si:dkey-33o22.1	10: 27738239 ~ 27741809 (-)
ENSDARG00000069673	chid1	25: 3788074 ~ 3800889 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	Neutrophils (cluster: 8)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Pigment cells (cluster: 18)	potential marker	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	Iridophore (cluster: 9)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (1.25dpf)	embryo	baseline	1.25dpf, FACS sorted sox10:nEOS cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000074442

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences