Fish Single-cell RNA Database

GENE ID: ENSDARG00000074258

Symbol	Location	Gene type	Genome version	Species
gramd1bb	18: 46840797 ~ 46957840 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000074258 (gramd1bb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000103648	znf536	7: 46252993 ~ 46514996 (+)
ENSDARG00000059751	abtb2a	7: 49272702 ~ 49320952 (+)
ENSDARG00000060631	NA	5: 33356425 ~ 33460959 (-)
ENSDARG00000062565	kcnh4a	3: 17547532 ~ 17604109 (+)
ENSDARG00000009735	gigyf2	2: 48203278 ~ 48255843 (-)
ENSDARG00000068323	astn1	2: 34572690 ~ 34984255 (+)
ENSDARG00000078733	cnnm2b	1: 31725154 ~ 31799359 (+)
ENSDARG00000095022	thsd7ba	9: 10152820 ~ 10532591 (-)
ENSDARG00000044053	vsnl1b	17: 6715575 ~ 6759149 (-)
ENSDARG00000044414	csmd1a	13: 6342410 ~ 6582725 (+)
ENSDARG00000021547	vrk2	13: 26780004 ~ 26799244 (-)
ENSDARG00000068247	luzp2	18: 37836960 ~ 38088099 (-)
ENSDARG00000074258	gramd1bb	18: 46840797 ~ 46957840 (-)
ENSDARG00000061990	kcnh4b	12: 13404784 ~ 13476088 (+)
ENSDARG00000015065	c4	15: 32351886 ~ 32383529 (-)
ENSDARG00000074804	atxn7	11: 19511642 ~ 19598809 (-)
ENSDARG00000025902	plekhg5a	11: 24464356 ~ 24538860 (-)
ENSDARG00000061497	thsd7bb	11: 33628104 ~ 33772872 (+)
ENSDARG00000099080	sbno1	10: 44309997 ~ 44355534 (-)
ENSDARG00000045447	slc35g2b	24: 3413854 ~ 3419998 (-)
ENSDARG00000076238	gramd1c	24: 21131874 ~ 21150169 (-)
ENSDARG00000063101	man2a2	25: 8662469 ~ 8742650 (+)
ENSDARG00000062000	abtb2b	25: 24616717 ~ 24723873 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Epithelial cells (cluster: 12)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000074258

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences