Fish Single-cell RNA Database

GENE ID: ENSDARG00000040510

Symbol	Location	Gene type	Genome version	Species
ca15b	12: 4294923 ~ 4301376 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000040510 (ca15b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000022424	slc26a5	4: 14932537 ~ 14954327 (-)
ENSDARG00000003615	slc26a3.2	4: 18804317 ~ 18823032 (+)
ENSDARG00000003203	rhcga	7: 14291323 ~ 14302716 (+)
ENSDARG00000035171	btg4	5: 57924611 ~ 57926693 (+)
ENSDARG00000054127	slc26a6l	6: 40723554 ~ 40732692 (+)
ENSDARG00000032808	tdrd7a	1: 12195700 ~ 12228116 (+)
ENSDARG00000068255	nanos3	1: 55247370 ~ 55248496 (-)
ENSDARG00000070166	zgc:153499	9: 8407778 ~ 8413219 (+)
ENSDARG00000092090	si:ch211-125e6.12	9: 33216945 ~ 33218269 (+)
ENSDARG00000078754	gra	16: 16222394 ~ 16226180 (-)
ENSDARG00000069251	zpax1	20: 43737022 ~ 43743700 (-)
ENSDARG00000097292	slc26a6	8: 26253252 ~ 26267110 (+)
ENSDARG00000089162	afap1l1a	14: 34562426 ~ 34633960 (-)
ENSDARG00000022813	dnd1	14: 7397804 ~ 7409364 (-)
ENSDARG00000021521	rgs14a	14: 872016 ~ 899192 (-)
ENSDARG00000018145	mid1ip1l	14: 41466368 ~ 41469036 (-)
ENSDARG00000040510	ca15b	12: 4294923 ~ 4301376 (-)
ENSDARG00000006580	cldnd	21: 25777425 ~ 25778201 (+)
ENSDARG00000055973	zar1l	10: 33999869 ~ 34002185 (-)
ENSDARG00000027169	kpna7	10: 25214270 ~ 25217347 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000040510

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences