Fish Single-cell RNA Database

GENE ID: ENSDARG00000039657

Symbol	Location	Gene type	Genome version	Species
fank1	12: 45132906 ~ 45149516 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000039657 (fank1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000006889	mpped2a	7: 16348835 ~ 16461232 (+)
ENSDARG00000061746	arhgef9a	5: 21939733 ~ 22001053 (-)
ENSDARG00000027109	zfr	5: 41124098 ~ 41142768 (-)
ENSDARG00000035470	sh3glb2b	5: 31640881 ~ 31689911 (-)
ENSDARG00000059455	dqx1	5: 72066835 ~ 72075456 (-)
ENSDARG00000040608	gcnt7	6: 56097971 ~ 56111829 (-)
ENSDARG00000021480	olfml2bb	2: 20604775 ~ 20615639 (+)
ENSDARG00000056793	jazf1b	16: 20738740 ~ 20800498 (+)
ENSDARG00000076380	hnrnpa0l	20: 45620076 ~ 45622385 (+)
ENSDARG00000097920	tex36	17: 8748655 ~ 8753354 (-)
ENSDARG00000079029	dhx32b	17: 32343121 ~ 32360489 (+)
ENSDARG00000009982	fam199x	14: 10338417 ~ 10371638 (-)
ENSDARG00000093781	lrriq1	18: 16192083 ~ 16218370 (+)
ENSDARG00000068103	cfap45	18: 35173683 ~ 35197599 (+)
ENSDARG00000075441	vwa2	12: 30312308 ~ 30345444 (-)
ENSDARG00000016156	fam53b	12: 46883785 ~ 46937956 (+)
ENSDARG00000039657	fank1	12: 45132906 ~ 45149516 (-)
ENSDARG00000077461	dhx32a	12: 45150709 ~ 45189108 (+)
ENSDARG00000063594	hipk1a	23: 36816486 ~ 36857966 (-)
ENSDARG00000037837	ogfr	23: 578218 ~ 588248 (+)
ENSDARG00000044755	NA	21: 15833222 ~ 15841167 (+)
ENSDARG00000077550	gcnt4b	21: 15865523 ~ 15869484 (+)
ENSDARG00000094181	shroom1	21: 43253538 ~ 43310488 (+)
ENSDARG00000077095	si:ch211-160o17.4	11: 2649664 ~ 2684595 (+)
ENSDARG00000099409	zgc:162182	11: 20899029 ~ 20906178 (+)
ENSDARG00000059342	avil	11: 169394 ~ 183328 (-)
ENSDARG00000014550	rfx3	10: 600164 ~ 641609 (-)
ENSDARG00000031248	enkur	24: 6673200 ~ 6678640 (-)
ENSDARG00000071683	zfr2	22: 5056288 ~ 5099824 (-)
ENSDARG00000051925	cyb5r2	25: 16044734 ~ 16057539 (-)
ENSDARG00000006981	ccdc113	25: 13662606 ~ 13668229 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000039657

EXPRESSION

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