Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
mbpa | 19: 21814047 ~ 21832630 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Oligodendrocytes (cluster: 14) |
marker |
DOI:10.1002/jbmr.4042 |
|
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Oligodendrocytes (cluster: 15) |
marker |
DOI:10.1002/jbmr.4042 |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Oligodendrocytes (cluster: 22) |
marker |
DOI:10.1093/g3journal/jkac062 |
|
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Oligodendrocytes (cluster: 40) |
marker |
DOI:10.7554/eLife.44431 |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Neuron (cluster: 17) |
potential marker |
NA |
|
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
Glia (cluster: 11) |
potential marker |
NA |
|
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment |
Oligodendrocytes (cluster: 15) |
potential marker |
NA |
|
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih |
Astrocyte (cluster: 18) |
potential marker |
NA |
|
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih |
Astrocyte (cluster: 15) |
potential marker |
NA |
|
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
Schwann cells (cluster: 1) Chromaffin cells (cluster: 11) |
potential marker potential marker |
NA NA |
|
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | ||||
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | ||||
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment | ||||
PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury | ||||
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury | ||||
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury | ||||
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury | ||||
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury | ||||
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury | ||||
PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured | ||||
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood | ||||
GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | ||||
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) | ||||
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | ||||
GSE159709 (melanoma) | tumor | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells | ||||
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases | ||||
PRJNA641144 (P_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo primary tumors | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT |