Fish Single-cell RNA Database

GENE ID: ENSDARG00000078997

Symbol	Location	Gene type	Genome version	Species
dclk3	19: 42938754 ~ 42945965 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000078997 (dclk3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000007523	kmt2e	4: 22424451 ~ 22472653 (-)
ENSDARG00000079366	ppp1r9ba	3: 23247325 ~ 23348084 (+)
ENSDARG00000037895	ramp2	3: 36836711 ~ 36846496 (-)
ENSDARG00000037966	thoc6	3: 32651697 ~ 32658436 (+)
ENSDARG00000103923	tfap4	3: 12202982 ~ 12227359 (-)
ENSDARG00000075098	wdr17	1: 38758261 ~ 38803495 (+)
ENSDARG00000056704	NA	9: 28778649 ~ 28867908 (-)
ENSDARG00000079751	megf8	16: 26380461 ~ 26437668 (-)
ENSDARG00000043973	znf292b	20: 196541 ~ 211920 (-)
ENSDARG00000040116	znf366	8: 955162 ~ 979735 (-)
ENSDARG00000089458	rp1l1a	17: 5768608 ~ 5822120 (+)
ENSDARG00000016763	znf292a	17: 49415354 ~ 49438873 (-)
ENSDARG00000037174	nek12	14: 28426602 ~ 28432699 (-)
ENSDARG00000053744	dcdc2b	13: 33304187 ~ 33314758 (+)
ENSDARG00000068983	btbd9	13: 44763835 ~ 44782467 (-)
ENSDARG00000063157	mapk8ip2	18: 8255265 ~ 8313686 (-)
ENSDARG00000089354	tspan4a	18: 50801307 ~ 50823466 (+)
ENSDARG00000071709	ppp1r9bb	12: 9703172 ~ 9774747 (+)
ENSDARG00000078997	dclk3	19: 42938754 ~ 42945965 (-)
ENSDARG00000087020	si:ch73-334d15.2	24: 36705855 ~ 36715984 (+)
ENSDARG00000040853	shoc2	22: 29596646 ~ 29640181 (-)
ENSDARG00000013472	nedd1	25: 19541019 ~ 19556986 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	Floor plate (cluster: 17)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000078997

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences