Fish Single-cell RNA Database

GENE ID: ENSDARG00000035944

Symbol	Location	Gene type	Genome version	Species
sync	19: 30990129 ~ 30997794 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000035944 (sync), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000030176	zgc:92429	7: 23727768 ~ 23745984 (-)
ENSDARG00000012281	zgc:65851	5: 13671614 ~ 13685047 (-)
ENSDARG00000063375	pter	2: 3603589 ~ 3616363 (-)
ENSDARG00000053248	inab	1: 31864404 ~ 31867717 (+)
ENSDARG00000021987	plecb	16: 5251768 ~ 5497474 (+)
ENSDARG00000077694	dtnba	20: 47290004 ~ 47348161 (-)
ENSDARG00000012426	neflb	8: 6873853 ~ 6877390 (-)
ENSDARG00000075556	luzp1	17: 28005763 ~ 28071945 (+)
ENSDARG00000013020	dtnbb	17: 37070096 ~ 37156520 (-)
ENSDARG00000011862	inaa	13: 28675686 ~ 28681036 (+)
ENSDARG00000062350	synm	18: 20859661 ~ 20869175 (-)
ENSDARG00000041747	sspn	18: 16111185 ~ 16123222 (-)
ENSDARG00000062590	pleca	19: 22407819 ~ 22621991 (-)
ENSDARG00000036830	krt91	19: 5378563 ~ 5380770 (-)
ENSDARG00000035944	sync	19: 30990129 ~ 30997794 (+)
ENSDARG00000057568	nefla	21: 19008168 ~ 19011040 (+)
ENSDARG00000031015	dtna	24: 35713659 ~ 35767501 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Muscle cells (cluster: 16)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000035944

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences