Fish Single-cell RNA Database

GENE ID: ENSDARG00000063215

Symbol	Location	Gene type	Genome version	Species
lrrc3b	19: 1606185 ~ 1619449 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000063215 (lrrc3b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045482	stk38l	4: 20224099 ~ 20235904 (-)
ENSDARG00000035970	ptprn2	7: 40228422 ~ 40499386 (+)
ENSDARG00000079611	sema4c	5: 14529101 ~ 14648433 (-)
ENSDARG00000078302	brinp1	5: 71252856 ~ 71460556 (-)
ENSDARG00000075352	brinp3b	2: 6734108 ~ 6807174 (+)
ENSDARG00000073950	cd4-2.2	16: 11960588 ~ 11963804 (-)
ENSDARG00000078523	ddr1	16: 21547583 ~ 21620949 (-)
ENSDARG00000099412	bcan	16: 29310145 ~ 29334672 (-)
ENSDARG00000042562	allc	20: 30355436 ~ 30370927 (-)
ENSDARG00000095879	wdr46	8: 53080515 ~ 53096754 (+)
ENSDARG00000091349	plekhd1	17: 48164536 ~ 48206211 (+)
ENSDARG00000053240	kif6	17: 48745740 ~ 48805159 (-)
ENSDARG00000070954	hmx2	17: 21782043 ~ 21784152 (-)
ENSDARG00000037108	pfdn6	14: 30550397 ~ 30557637 (-)
ENSDARG00000003061	cd276	18: 50433722 ~ 50524042 (-)
ENSDARG00000040036	tcf19l	19: 6834380 ~ 6840506 (-)
ENSDARG00000063215	lrrc3b	19: 1606185 ~ 1619449 (+)
ENSDARG00000042646	zgc:77784	15: 19456112 ~ 19602329 (+)
ENSDARG00000078366	robo2	15: 38859648 ~ 38892216 (+)
ENSDARG00000098239	zgc:85932	15: 43333121 ~ 43389922 (+)
ENSDARG00000014891	robo2	15: 39096736 ~ 39228226 (+)
ENSDARG00000056084	igsf21b	23: 21638258 ~ 21661916 (+)
ENSDARG00000102241	zgc:136410	21: 44505613 ~ 44512893 (-)
ENSDARG00000009387	robo4	10: 31244619 ~ 31284790 (+)
ENSDARG00000086408	zgc:171717	22: 25274712 ~ 25276038 (+)
ENSDARG00000086457	tnfaip8l1	22: 5153461 ~ 5171829 (-)
ENSDARG00000088895	si:dkeyp-98a7.7	22: 25715925 ~ 25717213 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000063215

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences