Fish Single-cell RNA Database

GENE ID: ENSDARG00000019772

Symbol	Location	Gene type	Genome version	Species
si:ch1073-280e3.1	15: 478524 ~ 496549 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000019772 (si:ch1073-280e3.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000100389	nitr11a	7: 17295053 ~ 17297156 (-)
ENSDARG00000021004	c5	5: 63458263 ~ 63509581 (-)
ENSDARG00000093689	FP016018.1	3: 58656312 ~ 58656994 (+)
ENSDARG00000061140	colec12	2: 31382590 ~ 31435158 (+)
ENSDARG00000087496	tradv30.0.6	2: 36597322 ~ 36597793 (-)
ENSDARG00000093198	c3a.4	1: 55997173 ~ 56032619 (-)
ENSDARG00000013266	colec11	17: 36516695 ~ 36529449 (-)
ENSDARG00000068726	masp1	15: 36187434 ~ 36223417 (+)
ENSDARG00000019772	si:ch1073-280e3.1	15: 478524 ~ 496549 (+)
ENSDARG00000007988	masp2	23: 28770225 ~ 28796157 (+)
ENSDARG00000044612	c1qb	21: 22712307 ~ 22715297 (-)
ENSDARG00000095627	c1qc	21: 22717824 ~ 22720381 (-)
ENSDARG00000044613	c1qa	21: 22721957 ~ 22724980 (-)
ENSDARG00000111761	igl3v4	24: 38197852 ~ 38198344 (+)
ENSDARG00000093855	igl3v2	24: 38201089 ~ 38201564 (+)
ENSDARG00000110046	igl3v1	24: 38205798 ~ 38206291 (+)
ENSDARG00000097228	si:dkey-234i14.12	25: 37290206 ~ 37290726 (+)
ENSDARG00000074062	si:dkey-234i14.15	25: 37305086 ~ 37305738 (-)
ENSDARG00000079843	igl4v8	25: 37289088 ~ 37317174 (+)
ENSDARG00000077452	si:dkey-234i14.14	25: 37299390 ~ 37300132 (+)
ENSDARG00000019591	igl4v9	25: 37318550 ~ 37319117 (-)
ENSDARG00000051760	igl4v10	25: 37320928 ~ 37322081 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Epithelial cells (cluster: 12)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000019772

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences