Fish Single-cell RNA Database

GENE ID: ENSDARG00000011400

Symbol	Location	Gene type	Genome version	Species
tnnc1a	23: 4890693 ~ 4895876 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000011400 (tnnc1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045560	mybpc1	4: 17726841 ~ 17793152 (-)
ENSDARG00000045822	tnnt2e	4: 7508316 ~ 7544687 (+)
ENSDARG00000032242	tnnt2c	4: 12031958 ~ 12033866 (+)
ENSDARG00000068457	tnnt3b	7: 39444843 ~ 39460363 (+)
ENSDARG00000076348	mylk3	7: 41821311 ~ 41858513 (-)
ENSDARG00000029995	tnni2b.2	7: 39385540 ~ 39394430 (+)
ENSDARG00000035958	tnni2b.1	7: 39399747 ~ 39406763 (+)
ENSDARG00000011615	mybpc3	7: 31838320 ~ 31899925 (+)
ENSDARG00000035438	myhc4	5: 32221755 ~ 32233862 (+)
ENSDARG00000034424	atp1b2b	5: 38475531 ~ 38506981 (-)
ENSDARG00000095930	myha	5: 32246872 ~ 32257316 (+)
ENSDARG00000067995	myhz1.2	5: 32281815 ~ 32293002 (-)
ENSDARG00000067990	myhz1.1	5: 32298624 ~ 32309129 (-)
ENSDARG00000007344	tcap	3: 21240594 ~ 21242460 (-)
ENSDARG00000037954	tnnt1	3: 32157140 ~ 32170878 (-)
ENSDARG00000001993	myhb	6: 40745437 ~ 40756138 (-)
ENSDARG00000100694	tnnt2b	6: 54761141 ~ 54796072 (-)
ENSDARG00000052708	tnni1b	6: 54805136 ~ 54826061 (-)
ENSDARG00000079564	myh7	2: 24252987 ~ 24270062 (-)
ENSDARG00000079782	myh7l	2: 24274293 ~ 24289726 (-)
ENSDARG00000037266	myoz2b	1: 25917591 ~ 25936679 (-)
ENSDARG00000020890	tmod4	16: 29650698 ~ 29684858 (+)
ENSDARG00000104139	atp1a3b	16: 10776688 ~ 10820909 (+)
ENSDARG00000090637	myh6	20: 53577502 ~ 53583436 (+)
ENSDARG00000042559	tnni1c	18: 6625348 ~ 6634424 (-)
ENSDARG00000035458	atp2a1l	12: 13244149 ~ 13263658 (+)
ENSDARG00000018259	atp1a3a	19: 6328234 ~ 6385594 (-)
ENSDARG00000037539	tnnc1b	23: 20110086 ~ 20112596 (+)
ENSDARG00000011400	tnnc1a	23: 4890693 ~ 4895876 (+)
ENSDARG00000020610	tnnt2a	23: 5653224 ~ 5685172 (-)
ENSDARG00000000474	tnni1a	23: 5723090 ~ 5729484 (-)
ENSDARG00000006923	cacna1ab	11: 30817943 ~ 31026335 (+)
ENSDARG00000023963	tpm4a	22: 15577827 ~ 15602760 (-)
ENSDARG00000030270	tnnt3a	25: 31405266 ~ 31418457 (+)
ENSDARG00000002988	tnnt2d	25: 20215964 ~ 20226584 (+)
ENSDARG00000045592	tnni2a.1	25: 31222069 ~ 31236549 (+)
ENSDARG00000005841	tnni2a.2	25: 31238606 ~ 31248602 (+)
ENSDARG00000013752	tnni2a.3	25: 31264155 ~ 31275944 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	Heart primordium (cluster: 18)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Differentiated art.CMs (cluster: 2)	potential marker	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	Differentiated art.ventricle (cluster: 4)	potential marker	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	Cardiac mesoderm (cluster: 5)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Heart primordium (cluster: 30)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	Heart primordium (cluster: 10)	potential marker	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	Heart primordium (cluster: 7)	potential marker	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Heart primordium (cluster: 5)	potential marker	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Heart primordium (cluster: 4)	potential marker	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Cardiomyocytes (cluster: 1) Cardiomyocytes (cluster: 8)	potential marker potential marker	NA NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000011400

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences