Fish Single-cell RNA Database

GENE ID: ENSDARG00000062662

Symbol	Location	Gene type	Genome version	Species
lmod3	23: 13814978 ~ 13822642 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000062662 (lmod3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000096473	mcat	4: 18839856 ~ 18850799 (-)
ENSDARG00000016613	mcat	4: 18846624 ~ 18851365 (-)
ENSDARG00000076449	kbtbd13	7: 13748687 ~ 13750108 (-)
ENSDARG00000012311	myoz2a	7: 69829442 ~ 69857692 (-)
ENSDARG00000035468	slc25a25b	5: 31779911 ~ 31806613 (+)
ENSDARG00000079616	cramp1	3: 15859612 ~ 15889508 (-)
ENSDARG00000059914	sdr42e2	3: 58379450 ~ 58416968 (+)
ENSDARG00000087285	tmem182b	6: 14301214 ~ 14312611 (+)
ENSDARG00000006757	klhl41b	6: 3680651 ~ 3692280 (+)
ENSDARG00000039052	klhl40a	2: 21326957 ~ 21335131 (-)
ENSDARG00000056464	fitm1l	2: 24304854 ~ 24308682 (+)
ENSDARG00000068888	klhl41a	9: 48270379 ~ 48281941 (-)
ENSDARG00000040374	tmem182a	9: 6915611 ~ 6927587 (-)
ENSDARG00000041779	trdn	20: 40150612 ~ 40231379 (+)
ENSDARG00000014106	cfl2	17: 10007071 ~ 10025234 (-)
ENSDARG00000056209	myoz1a	13: 22264914 ~ 22278415 (+)
ENSDARG00000039066	klhl31	13: 2338761 ~ 2350762 (+)
ENSDARG00000056639	carmil2	18: 22302635 ~ 22396371 (+)
ENSDARG00000071445	myoz1b	12: 26385096 ~ 26408876 (-)
ENSDARG00000060788	lrrc14b	19: 44039849 ~ 44047176 (+)
ENSDARG00000061728	acot13	19: 31576849 ~ 31579383 (+)
ENSDARG00000012409	rnf207b	23: 21499585 ~ 21515182 (-)
ENSDARG00000062662	lmod3	23: 13814978 ~ 13822642 (+)
ENSDARG00000075752	myo18aa	10: 36950773 ~ 37075361 (-)
ENSDARG00000019125	klhl40b	24: 20575259 ~ 20581672 (+)
ENSDARG00000071465	lrrc39	22: 16308450 ~ 16312217 (+)
ENSDARG00000013907	si:ch211-253p14.2	25: 29610121 ~ 29611476 (-)
--	myom3	--
--	adssl1	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000062662

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences