Fish Single-cell RNA Database

GENE ID: ENSDARG00000011549

Symbol	Location	Gene type	Genome version	Species
c1ql4a	23: 28399313 ~ 28423222 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000011549 (c1ql4a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000035630	ypel1	5: 13037106 ~ 13086616 (-)
ENSDARG00000054362	ccdc47	3: 31705454 ~ 31716157 (-)
ENSDARG00000055498	si:ch1073-184j22.1	2: 5371492 ~ 5389696 (+)
ENSDARG00000063371	rasa3	1: 357518 ~ 411331 (-)
ENSDARG00000019008	erp44	16: 27417200 ~ 27442344 (-)
ENSDARG00000062310	wdr26a	16: 2482498 ~ 2504005 (-)
ENSDARG00000006812	wdr26b	20: 46699021 ~ 46734051 (+)
ENSDARG00000079308	tor3a	8: 16597139 ~ 16609004 (-)
ENSDARG00000090071	rxfp1	14: 48107216 ~ 48260744 (-)
ENSDARG00000069739	fndc5a	13: 45786113 ~ 45811137 (-)
ENSDARG00000068784	vsir	13: 43130895 ~ 43149063 (-)
ENSDARG00000035895	fndc5b	19: 29383486 ~ 29437109 (-)
ENSDARG00000087258	ypel2b	15: 16897554 ~ 16914645 (+)
ENSDARG00000070681	c1qtnf12	23: 24705424 ~ 24750935 (+)
ENSDARG00000011549	c1ql4a	23: 28399313 ~ 28423222 (-)
ENSDARG00000028306	prph	11: 3320598 ~ 3334250 (-)
ENSDARG00000077596	phf24	10: 17850934 ~ 17926298 (+)
ENSDARG00000077224	ypel2a	10: 35201850 ~ 35236949 (-)
ENSDARG00000032820	rxfp2a	10: 33744098 ~ 33867426 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	Oligodendrocyte precursor cells (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000011549

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences