Fish Single-cell RNA Database

GENE ID: ENSDARG00000069495

Symbol	Location	Gene type	Genome version	Species
tmem179b	21: 25664393 ~ 25669820 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000069495 (tmem179b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000035629	parvab	7: 65673885 ~ 65706839 (+)
ENSDARG00000075584	itfg1	7: 41981366 ~ 42206720 (-)
ENSDARG00000013058	ascc2	5: 18012154 ~ 18035253 (+)
ENSDARG00000055172	si:ch211-256m1.8	3: 25154078 ~ 25165189 (+)
ENSDARG00000092240	si:ch211-243a20.3	1: 45351890 ~ 45366422 (+)
ENSDARG00000041998	zgc:113337	9: 9322424 ~ 9348058 (-)
ENSDARG00000079045	opn8b	20: 44311448 ~ 44347622 (+)
ENSDARG00000070110	opn5	20: 35998073 ~ 36036696 (+)
ENSDARG00000020237	mc1r	18: 31226288 ~ 31227615 (-)
ENSDARG00000074442	alx4b	18: 38321039 ~ 38364462 (+)
ENSDARG00000089276	tmem235b	12: 34416175 ~ 34427909 (-)
ENSDARG00000031348	mc5ra	19: 12762887 ~ 12803408 (+)
ENSDARG00000109783	igsf11	15: 46386261 ~ 46598864 (+)
ENSDARG00000069495	tmem179b	21: 25664393 ~ 25669820 (-)
ENSDARG00000077082	agtrap	11: 16040517 ~ 16064291 (+)
ENSDARG00000075343	csf1a	11: 23265157 ~ 23297192 (+)
ENSDARG00000056028	slc22a7a	11: 30729745 ~ 30742966 (+)
ENSDARG00000112889	rab38b	10: 25272355 ~ 25283609 (+)
ENSDARG00000036117	mchr2	24: 34806822 ~ 34823043 (+)
ENSDARG00000089205	si:dkey-73n8.3	24: 18469766 ~ 18485491 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000069495

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences