Fish Single-cell RNA Database

GENE ID: ENSDARG00000070078

Symbol	Location	Gene type	Genome version	Species
abcb11b	11: 13223625 ~ 13272085 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070078 (abcb11b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000100780	slco1e1	4: 77349261 ~ 77380592 (-)
ENSDARG00000098663	fgf19	7: 54642005 ~ 54645564 (+)
ENSDARG00000053068	cyp8b1	2: 3435888 ~ 3437862 (-)
ENSDARG00000017180	npc1	2: 3823813 ~ 3866971 (+)
ENSDARG00000008858	cyp7b1	2: 42135719 ~ 42152135 (+)
ENSDARG00000069018	cyp7a1	2: 22150134 ~ 22152797 (-)
ENSDARG00000063730	osbpl6	9: 1391535 ~ 1459985 (-)
ENSDARG00000011573	abcb11a	9: 48755638 ~ 48817119 (+)
ENSDARG00000088013	NA	9: 38427572 ~ 38433916 (+)
ENSDARG00000014916	slc10a2	9: 27339505 ~ 27344683 (+)
ENSDARG00000029766	nr1i2	9: 9502610 ~ 9562644 (+)
ENSDARG00000063224	nxph2a	9: 10014514 ~ 10043859 (+)
ENSDARG00000044685	nr0b2a	16: 54875530 ~ 54880550 (+)
ENSDARG00000111235	nrsn1	16: 221739 ~ 229482 (+)
ENSDARG00000103690	vipas39	20: 18352770 ~ 18382892 (-)
ENSDARG00000030588	slc10a1	20: 28861435 ~ 28867748 (+)
ENSDARG00000043514	si:dkey-239i20.4	20: 15114957 ~ 15134513 (-)
ENSDARG00000031046	nr1h5	8: 10903325 ~ 10932206 (-)
ENSDARG00000062182	slc22a7b.3	17: 21982617 ~ 21993707 (-)
ENSDARG00000057741	nr1h4	18: 15644559 ~ 15666942 (+)
ENSDARG00000096662	abcc3	12: 695619 ~ 786808 (+)
ENSDARG00000102756	nr0b2b	19: 14153486 ~ 14155781 (-)
ENSDARG00000056572	nrsn1l	19: 28356753 ~ 28367413 (-)
ENSDARG00000036764	hax1	19: 7799036 ~ 7805132 (+)
ENSDARG00000075948	slco4a1	23: 7067196 ~ 7125494 (-)
ENSDARG00000060980	atp8b1	21: 3618519 ~ 3700334 (-)
ENSDARG00000044566	fabp6	21: 30043054 ~ 30047353 (+)
ENSDARG00000070078	abcb11b	11: 13223625 ~ 13272085 (+)
ENSDARG00000045306	slc51a	24: 24961899 ~ 24983047 (-)
ENSDARG00000019302	mid1ip1b	22: 11436447 ~ 11438627 (-)
ENSDARG00000093007	mphosph6	25: 35952036 ~ 35956344 (-)
--	si:cabz01083442.1	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Hepatocytes (cluster: 11)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000070078

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences