Fish Single-cell RNA Database

GENE ID: ENSDARG00000013834

Symbol	Location	Gene type	Genome version	Species
arhgef3	22: 38968246 ~ 38993218 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000013834 (arhgef3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000059855	wdr66	5: 41774366 ~ 41792672 (+)
ENSDARG00000038010	rac2	3: 29510818 ~ 29544039 (+)
ENSDARG00000099996	rhot1a	3: 26288981 ~ 26319758 (+)
ENSDARG00000087954	rac1b	3: 56574623 ~ 56594285 (+)
ENSDARG00000090062	rac3a	3: 36248851 ~ 36260102 (-)
ENSDARG00000021309	rhoca	6: 48382697 ~ 48418021 (-)
ENSDARG00000070121	rhoh	1: 23398405 ~ 23398992 (+)
ENSDARG00000020250	rhoj	20: 20186706 ~ 20222219 (+)
ENSDARG00000070434	rhov	20: 28364742 ~ 28368137 (+)
ENSDARG00000007869	ehd3	20: 38201644 ~ 38241859 (+)
ENSDARG00000094673	rhoab	8: 25900049 ~ 25906026 (+)
ENSDARG00000018328	rhocb	8: 27555314 ~ 27624329 (+)
ENSDARG00000043627	tbc1d9	14: 1365097 ~ 1392173 (+)
ENSDARG00000019709	rhoua	13: 24371815 ~ 24379271 (-)
ENSDARG00000017329	cdkl1	13: 36693152 ~ 36703164 (-)
ENSDARG00000074849	rac1a	12: 10464897 ~ 10476448 (-)
ENSDARG00000020795	rac3b	12: 3022882 ~ 3042029 (+)
ENSDARG00000025953	rhoq	12: 25110016 ~ 25150279 (-)
ENSDARG00000116058	rhoac	23: 900955 ~ 912817 (-)
ENSDARG00000004301	rhogb	21: 30937690 ~ 30951909 (+)
ENSDARG00000032373	rnf145b	21: 34001712 ~ 34032650 (-)
ENSDARG00000054389	rhof	10: 41969428 ~ 41980797 (-)
ENSDARG00000056328	rhot2	24: 37533728 ~ 37559496 (+)
ENSDARG00000013834	arhgef3	22: 38968246 ~ 38993218 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	NA	NA	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	NA	NA	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	NA	NA	NA
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture	NA	NA	NA
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture	NA	NA	NA
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000013834

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences