Fish Single-cell RNA Database

GENE ID: ENSDARG00000097208

Symbol	Location	Gene type	Genome version	Species
NA	25: 30298377 ~ 30299662 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000097208 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000004386	NA	4: 9669717 ~ 9690419 (+)
ENSDARG00000098105	tmem106c	3: 1323732 ~ 1339220 (-)
ENSDARG00000075108	tmco3	1: 218524 ~ 225137 (+)
ENSDARG00000042899	NA	8: 23783066 ~ 23809686 (+)
ENSDARG00000002732	spon2b	14: 17376940 ~ 17382534 (+)
ENSDARG00000039482	calhm2.1	13: 25421531 ~ 25426955 (+)
ENSDARG00000074179	calhm2.2	13: 25418561 ~ 25424269 (+)
ENSDARG00000042213	NA	18: 8917766 ~ 8955573 (+)
ENSDARG00000011076	zgc:91968	19: 4990320 ~ 4999232 (+)
ENSDARG00000076659	cdca7b	19: 2569150 ~ 2582858 (-)
ENSDARG00000078859	g0s2	23: 39606108 ~ 39607679 (+)
ENSDARG00000040621	lrrc32	10: 252425 ~ 257043 (+)
ENSDARG00000077609	elfn2a	22: 15009168 ~ 15010688 (-)
ENSDARG00000097208	NA	25: 30298377 ~ 30299662 (+)
ENSDARG00000088356	tmem117	25: 710139 ~ 752158 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Iridophore (cluster: 18)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured	Mesenchymal cells (cluster: 5)	potential marker	NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	Fibroblasts (cluster: 3) Fibroblasts (cluster: 7)	potential marker potential marker	NA NA
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Fibroblasts (cluster: 10) Fibroblasts (cluster: 4) Fibroblasts (cluster: 6)	potential marker potential marker potential marker	NA NA NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Mesenchymal cells (cluster: 8)	potential marker	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	Fibroblasts (cluster: 6)	potential marker	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	Fibroblasts (cluster: 4) Mesenchymal cells (cluster: 6)	potential marker potential marker	NA NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Fibroblasts (cluster: 4) Fibroblasts (cluster: 6)	potential marker potential marker	NA NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Fibroblasts (cluster: 1)	potential marker	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Smooth muscle cells (cluster: 11) Fibroblasts (cluster: 12) Fibroblasts (cluster: 6)	potential marker potential marker potential marker	NA NA NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	Smooth muscle cells (cluster: 6)	potential marker	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	Epidermal cells (cluster: 6)	potential marker	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Smooth muscle cells (cluster: 3)	potential marker	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Muller glia cells (cluster: 13)	potential marker	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Muller glia cells (cluster: 5)	potential marker	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	Muscle cells (cluster: 6)	potential marker	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Stromal (cluster: 1)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000097208

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences