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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| cckb | KN150698.1: 2793 ~ 8412 (+) | protein_coding | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Dorsal habenula (cluster: 9) |
potential marker |
NA |
|
| GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
Skin (cluster: 10) |
potential marker |
NA |
|
| PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 9) |
potential marker |
NA |
|
| PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 16) Skeletal muscle cells (cluster: 17) |
potential marker potential marker |
NA NA |
|
| PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Skeletal muscle cells (cluster: 15) Skeletal muscle cells (cluster: 19) |
potential marker potential marker |
NA NA |
|
| GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated |
Corpuscles of stannius (cluster: 8) |
potential marker |
NA |
|
| PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Epidermal cells (cluster: 1) Support cells (cluster: 3) |
potential marker potential marker |
NA NA |
|
| PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
Epidermal cells (cluster: 2) |
potential marker |
NA |
|
| PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days |
Basal cells (cluster: 2) |
potential marker |
NA |
|
| PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS |
Basal cells (cluster: 6) |
potential marker |
NA |
|
| GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | NA | NA | NA | |
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Epidermal cells (cluster: 14) Epidermal cells (cluster: 29) |
potential marker potential marker |
NA NA |
|
| PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | NA | NA | NA | |
| GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type | NA | NA | NA | |
| GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant | NA | NA | NA | |
| PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | NA | NA | NA | |
| PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | NA | NA | NA | |
| PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | NA | NA | NA | |
| PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells | NA | NA | NA | |
| PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | NA | NA | NA | |
| PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells | NA | NA | NA | |
| PRJNA706197 (1.25dpf) | embryo | baseline | 1.25dpf, FACS sorted sox10:nEOS cells | NA | NA | NA | |
| PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells | NA | NA | NA | |
| PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury | NA | NA | NA | |
| PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | NA | NA | NA | |
| GSE150498 (wildtype, untreated) | intestine | baseline | 6dpf, wildtype, untreated | NA | NA | NA | |
| GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS | NA | NA | NA | |
| GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS | NA | NA | NA | |
| GSE150498 (wildtype, 2X DSS) | intestine | disease | 6dpf, wildtype, 2X DSS | NA | NA | NA | |
| GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA | NA | NA | NA | |
| GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS | NA | NA | NA | |
| GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA | NA | NA | NA | |
| GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | NA | NA | NA | |
| PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | NA | NA | NA | |
| PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | NA | NA | NA | |
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | NA | NA | NA | |
| PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih | NA | NA | NA | |
| PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | NA | NA | NA | |
| GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | NA | NA | NA |