Fish Single-cell RNA Database

GENE ID: --

Symbol	Location	Gene type	Genome version	Species
snap91	--	--	--	Danio rerio

PPI (protein-protein interaction) results are shown above.

Green is -- (snap91), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000103648	znf536	7: 46252993 ~ 46514996 (+)
ENSDARG00000003269	clcn3	7: 7511914 ~ 7643941 (+)
ENSDARG00000102458	hip1rb	5: 66366865 ~ 66429357 (-)
ENSDARG00000008377	epn2	3: 39656188 ~ 39690218 (+)
ENSDARG00000079891	dnajc6	6: 31279542 ~ 31348999 (-)
ENSDARG00000007663	amph	2: 31891335 ~ 31937005 (-)
ENSDARG00000052016	cabp2a	1: 44127292 ~ 44141442 (+)
ENSDARG00000042114	bin1a	9: 7410798 ~ 7444753 (-)
ENSDARG00000027079	znf804a	9: 11906770 ~ 12034444 (-)
ENSDARG00000063311	soga3a	16: 5184402 ~ 5199333 (+)
ENSDARG00000010411	epn1	16: 12730311 ~ 12756528 (+)
ENSDARG00000101606	rims2a	16: 44338805 ~ 44399335 (-)
ENSDARG00000020898	cyb5r4	16: 3067134 ~ 3096745 (+)
ENSDARG00000095751	NA	20: 1398564 ~ 1406308 (+)
ENSDARG00000090722	NA	20: 1412193 ~ 1421005 (+)
ENSDARG00000063416	ptprk	20: 1441548 ~ 1560849 (-)
ENSDARG00000078216	eps15	8: 16514830 ~ 16559241 (-)
ENSDARG00000025535	clint1a	14: 35279343 ~ 35390283 (+)
ENSDARG00000033899	ap2m1b	18: 45955042 ~ 45983382 (+)
ENSDARG00000088885	si:ch1073-340i21.3	15: 46329149 ~ 46336399 (+)
ENSDARG00000014652	ankrd13b	15: 28482862 ~ 28539650 (+)
ENSDARG00000090716	cltcb	15: 17285989 ~ 17340198 (+)
ENSDARG00000079931	snx19b	15: 17441734 ~ 17489726 (+)
ENSDARG00000089914	clint1b	21: 33503835 ~ 33550282 (+)
ENSDARG00000043493	cltca	10: 28311031 ~ 28368913 (-)
ENSDARG00000042670	eps15l1a	22: 15912253 ~ 15957079 (-)
--	snap91	--
--	eps15l1b	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	Neuron (cluster: 14)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Neuron (cluster: 23)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: --

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences