CI01000072_00441183_00448301


Basic Information

Item Value
gene id CI01000072_00441183_00448301
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 440626 ~ 448472 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00441183_00448301.mRNA
GTATTAAATCCCGGTCAATTTTAAAGTGGGGTCCTGCATGGGGGGTCACCTCAGATGTTCTCTGTTGGTCTTCCTCTCCAGTGTTCTCCTAACTCACACATTGGTGCTTTTCATGAGAAACATGGTTTCTGCTTCAGTACTTTCTTGTTCTTTTTAGAGCGTCAGCGTTTCTGAGTTTGATTTTCAAGGGCGAGAACATCTAATTGTGTCTAGCCTGCTCTGAACGGTATCTCTGATTCACAGCCCAAAACCACAGAAGAACAAGAACACTCGAGGAGCGAGCGCGAACCTCCTTTTATCTAGCAGTCGTTTAATTCTTTCTACGATATTGTTTGAATGCTTCTCGTATTTCTCGCATGGATTTATTAGTAACTCTTTGATCTATTTCAGTCAGTCTAAAACAGTCGCCTTTTTTTCTCTCTAGATGAAATACTTGAAAGCCGCTCTGCAGACGAGCTCCATTATTTGTTTTTACATCAAAAGTTTCATTAGTTATTCCATTAATCATAGTCATGTAAAGGGGCTGGAGAGTGACGGAGTGGCAGGCTTTAGCCCGCATGGCCCTGCTCTGGGGAGATCTGGGAAGGGGGAATGAAAACAGACAGGGCCGGCTTGGCTGCCAAGTGGAGATGATCCAGGAGCGGGCAGAGAGGAATGCAAACGAGTGGAGAGGGGGGTTGAGAAGGGGTGTTTGGAGAGAGAAACACTTGAGCGCTGGAACAGGCAGCCTGGTAATGGAATCGCAGCAGGTAAAGCAGACTTGCCCATCCGATGGCGGCGCAGGGCACCGTCCGTATTACGGCACAGCTCTGTGCAGGCGTGGCACCGTTCCGGGCATCGAAGGGGGTGTGCCACCCACCCCCTGCAGTGACCCTCTGCAGAGACAGACAGACGGACAGATGGAGGAACTGAGGGGGCCCTTCCCGGAAAACCGCCACCTTCTGCCAGTACCTAATGACCCACTTTTAGCTATGAGGAACACTGTGCATGTGGAATGGCATCAACTTCTTTCCGGGGCTGTTGAGCTGATGGCGTATTGCATATTAACCAAACTGCAAATTGGATTTGGGGATGTTGATGAGTCTACAAGTGCTGGATTGCCCGTCAAAAATTCCCAACCTTCACAGTTATCTAGTATTTATAGGCCATTATGTAATGTGGCCCCGGGATATGAACTTGTTGTCTGAAATGAAGTTTTTGCCAACAAATTGGATGGTTTTATTGAAATTAGCAAGTTATAAAGTTCTACACAACTTGCCCCCTTTGTGTGTTTGATTGTTAAATATTTTAGCTTAATTTTATGCTTGCTTTCAGCTACCAATAATGGTAAAACTTTAGTATGGGGATAGGGCTGTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00441183_00448301.mRNA True 1358 mRNA 0.47 4 440626 448472

Neighbor

gene id symbol gene type direction distance location
CI01000072_00404877_00406183 DHRS13A.3, DHR13 coding upstream 33534 404877 ~ 407092 (+)
CI01000072_00400359_00403220 CRYBA1A, CRB12, CRYBA1, CRYBA4 coding upstream 37112 399816 ~ 403514 (+)
CI01000072_00368515_00382013 FOXN1 coding upstream 57907 368515 ~ 382719 (+)
CI01000072_00338411_00351144 NA coding upstream 89350 337071 ~ 351288 (+)
CI01000072_00315525_00322937 SARM1 coding upstream 117557 313057 ~ 323069 (+)
CI01000072_00453946_00487772 NA coding downstream 5269 453741 ~ 488634 (+)
CI01000072_00603805_00621584 NA coding downstream 154170 602642 ~ 621833 (+)
CI01000072_00629638_00638277 LHX1, LHX1A, LHX1.L coding downstream 181166 629638 ~ 639351 (+)
CI01000072_00760940_00797319 BRIP1 coding downstream 312468 760940 ~ 797319 (+)
CI01000072_00847890_00857227 NA coding downstream 398727 847199 ~ 857899 (+)
G283951 NA non-coding upstream 60468 379916 ~ 380158 (+)
G283925 NA non-coding upstream 140300 298283 ~ 300326 (+)
CI01000072_00275132_00275592 NA non-coding upstream 165133 273980 ~ 277268 (+)
G283903 NA non-coding upstream 177795 262612 ~ 262831 (+)
G283797 NA non-coding upstream 196717 240653 ~ 243909 (+)
G283927 NA non-coding downstream 191957 640429 ~ 642060 (+)
G284111 NA non-coding downstream 197199 645671 ~ 646059 (+)
G284117 NA non-coding downstream 214121 662593 ~ 662875 (+)
G284121 NA non-coding downstream 219301 667773 ~ 668011 (+)
G284296 NA non-coding downstream 297250 745722 ~ 745972 (+)
G284742 NA other downstream 1533058 1981530 ~ 1985140 (+)
G285428 NA other downstream 3521785 3970257 ~ 3976214 (+)
G286470 NA other downstream 3720632 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 3776366 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3890247 4338719 ~ 4343266 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009284 NA non-coding NC_007126.7 CM002899.2 28010730 ~ 28015128 (-)
tiger barb (Puntius tetrazona) G106981 NA non-coding NC_056713.1 CM032082.1 15210936 ~ 15211136 (-)