XLOC_012057 (phyhipla)


Basic Information

Item Value
gene id XLOC_012057
gene name phyhipla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20963477 ~ 20979077 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023785
GTGCAGAGAAAGAGGTGTTATTAGAGACTGTGCTCAAATTGAGAATTAACGGTAGTGTGGAGTGGACCGTAATCTCGTTACATAACCCGTCACTGAACGCGCCGTCCGTCGGTTCATTGGCGTTAATCCGTTATTTCACTCCGCGAAAACACTTGTGGCATTCGTCAGAGCGAGAGAACTTCGACACGTTTAGGTTTTATCGTGATTATGAGAACTAAGATCATTTCACCGAGTCACTGTTAGAAGTAAGTGTTCTTTATAGTGTATATGCTTCTTGTATATGTCCAGTAGTGTGGAGGTCGCTGACGCGGTTTCCATCACAACGCCGGAGAGAGAGAGGAACAGGGGAGCCAAAGCGACCGAGAACCAGACTCACCCATTTCCAAGCCGAAACTGACGAGTATTTCCAAGGGTTTCCACGCGCCTCTTCAGACATGGAGGCGGCGAGTTTGGCACAGGGGGTCGCGAGCCCGCTGAGCCCGCGCGAGGGCATGATCAAGAACGTGAGCCTGGAGTCGCTCCAGCTGTGTGAGAGGGACGGTAAAGCTGAAGACACTGGAGTGGTAGAAATGGAGTTACCGGTGGCTCGCAACATCAAAATCAGTAACATCACCTGCGACTCCTTTAAAATCTGCTGGGATGTGGATCCACACAGCACAGAGAAGATCACACATTACTTCATTGACCTGAACAAGAAGGAGAACAAGAACTCCAACAAGTTCAAACACAAGGATGTGCCTACAAAGCTTGTTGCTAAGGCGGTTCCGTTGCCCATGACAGTGAGAGGCCATTGGTTCCTGAGTCCACGGACCGAATACACAGTTGCCGTGCAAACAGCGTCCAAACAGACAGACGGAGACTATGCTGTATCAGAATGGAGTGACATTGTTGAGTTTTGTACAGCAGATTATTCCCCTGTGCATTTGACTCAGCTGTTGCAGAAGGCTGAAGTCATTGCTGGCAGGATGCTCAAGTTCTCCGTCTTTTACAGGAATCAGCACGAGGAATACTTCCAACACTGCAGAGATGTTCTTGGTGGCAGAATGATGCCCTCAGTGAAGGATAATAGCGGCAGTCACGGGTCACCAATCAGTGGTAAACTAGAGGGCATCTTCTTCAGCTGTAACACAGAGTTCAACACCGGTCAGCCACCGCAGGACTCTCCATACGGCCGCTTCCGCTTCCAGGTGCCCGCTGAGGTTCTCTTCACCCCAGACACACGCCTTTACTTTGGGGACTTCTACTGCATGTACACCGCCTATCATTACGTCATCCTGGTCCTGGCGCCGCGGGGCTCCAAAGGAGACCTTTACTGCAGCGAGCGCCTTCCAGAGCTGGACGTGACCAACAACCGCTTTCTGATGCGACTGTGCGGAGAGGACGGGCACGTGGTCTTTCAGCATGCGCAGGATGTGATTCTGGAGCTGATTTACACAGAGCCGCTGCCGCTAGCTCTGGGAACGGTCTCTCAGATTAGCGGACACCAGCTCATGAGCTTGTCCACCATCAATGCTAAGAAAGACCCCAGCTGCAAGACCTGCAACATCAGCGTCGGCCGCTAGTTTGAGAGCAAACTCACAAATACAGAACCATTTGTGAATATAACATCAAACCGTACTCAAGACGTCATCAACAACTAAACAAACAAGCTTAGAATGGCACATAATCACGATGATTACCATGACAAACAGCCCCCTCTGGATATCACCACATGGCACTCAATTCCCTTGCTAATGCTAGATTTTTTTTAAGGTTGACTAAATCGAGCATTtgacaaaaaaagttaataaatgatcatttaaaaaagttaatatgAAAGAGACAAAATCTATGAAAGCCtgtttctgctgaattatttatttatttaaaaaaatgtaattgcacttttgttcttttttccTCATGATTTTAAGTGAGTTATGAGTTTTTCTCACAATTCAGACAGCTAATAATTGCAAGATATGAAGACTGAATTTGCGAAACAAGCAataattgtgaaatataaaattgaatttggggaaaaaagtaaattcagttttacatttttgcaattttaCATTTATCTCACAGTTCAAAGTTCATATTTCTTGCAAAAATctaagtttaaaaacattttcataattcAGATCTTTATTTCTCAAAATTCACATATGCTgaggaaaaaaatgtttacatttttctttattctaaTTGCAAGTTTATAACATAAGATTGCAATAAAAATACTCGGTACATTTTGTTGCAATTCGGAATGCAAAGATAacagcaaaatttttttttaaataattaaattgtagtTTTTATGTTACAGAAACAAACTTTCATATAAAACTGTATTTTCTGCAAtataagtcactttttaaaatcatattaacCTTGCTGTTGCTTCTGTTTCAAAGAGATTGTAATGTGTGGTGGTCCAGTTTTCCTGGGTCTGCGCACCCTTAATAGTGGCTGGTTATATAAATTAGCTTAGGGTTGACATTTACAGTGAATGCTTCTGTAATTTTAGCTTGTTTAAAATTACTTCTGTTCTGAGTACTCTTCAATTGTAAGGATTTGTTGTGGAGTGAAGGGAcctaaatgcatatttatattgtttgtaaatgttttgttgtatttgGGGTACTGAAAGTACTTAGTTTACATAATTTCAGAAAGAAAGTCTTTAACGTGACTCATACACCAATGCAACTTTCTTCAACTTATGCAATTTCAACAATGTGACTTATCTTGCAGAAAATACAGTAAGACAAAAAACACagactcaaagcaaaaaaaaagaaagaaaaactcaagagaaaaaagaaaactgaGCAAAACAAGTAAAAGctatatttccaaaaaaaaaaaaaaaaa
>TCONS_00023786
ATCCGTTATTTCACTCCGCGAAAACACTTGTGGCATTCGTCAGAGCGAGAGAACTTCGACACGTTTAGTAGTGTGGAGGTCGCTGACGCGGTTTCCATCACAACGCCGGAGAGAGAGAGGAACAGGGGAGCCAAAGCGACCGAGAACCAGACTCACCCATTTCCAAGCCGAAACTGACGAGTATTTCCAAGGGTTTCCACGCGCCTCTTCAGACATGGAGGCGGCGAGTTTGGCACAGGGGGTCGCGAGCCCGCTGAGCCCGCGCGAGGGCATGATCAAGAACGTGAGCCTGGAGTCGCTCCAGCTGTGTGAGAGGGACGGTAAAGCTGAAGACACTGGAGTGGTAGAAATGGAGTTACCGGTGGCTCGCAACATCAAAATCAGTAACATCACCTGCGACTCCTTTAAAATCTGCTGGGATGTGGATCCACACAGCACAGAGAAGATCACACATTACTTCATTGACCTGAACAAGAAGGAGAACAAGAACTCCAACAAGTTCAAACACAAGGTGCTCACTGATGTGTTATTCAggctttcatttttaaaagaatatttcATGACACACTTCCTGTGCAATATCTGGTCTTATAATGTTTGAAAtagctcataataataataataatcaagtgTCTTGTGTGTTTTAACCAACACACTATCAATTAACCTAAAATTGtattgcatttttaatgtttcttgcTCTTCGTCTTTAGGATGTGCCTACAAAGCTTGTTGCTAAGGCGGTTCCGTTGCCCATGACAGTGAGAGGCCATTGGTTCCTGAGTCCACGGACCGAATACACAGTTGCCGTGCAAACAGCGTCCAAACAGACAGACGGAGACTATGCTGTATCAGAATGGAGTGACATTGTTGAGTTTTGTACAGCAGATTATTCCCCTGTGCATTTGACTCAGCTGTTGCAGAAGGCTGAAGTCATTGCTGGCAGGATGCTCAAGTTCTCCGTCTTTTACAGGAATCAGCACGAGGAATACTTCCAACACTGCAGGTGATTTAAGAAACATTACCTCAGTAAGATATGCTTAGGATGTGACAGAGGGAGTGGAAAAGGACAGAGTGGAGCTGGTTGAGGATGATAATGAATACCTTGAATAATTTCTCTAGAGATTTAGCTCAGCGTTAGAAAGTACACAGCTCCCTCTAGTGGAATAATGTCCTCATTAATTCACAAGGATTCGTTTTGGTTTTTATAAACTACGTTCATGACTAAATTCACTGCTGTtaaaatgtttggggtcagtatgattttttttttaaataaaaaatatatcctTTTATTTGGCAATGATGTATTAAATTGATCTGTCTGTTTGTAATCAGTCTGAAATCTTTAGGGTTTGTCTATAAATACTGCTACATGACTGCTCaccaaaaaaaatacagaaa

Function

symbol description
phyhipla Predicted to be active in cytoplasm. Orthologous to human PHYHIPL (phytanoyl-CoA 2-hydroxylase interacting protein like).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-64 Predicted to be active in cytoplasm. Orthologous to human PHYHIPL (phytanoyl-CoA 2-hydroxylase interacting protein like).

Ensembl:

ensembl_id ENSDARG00000003998

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023785 False 2859 mRNA 0.41 5 20963477 20979077
TCONS_00023786 True 1404 nonsense_mediated_decay 0.43 4 20966835 20978952

Neighbor

gene id symbol gene type direction distance location
XLOC_012056 tmem26a coding downstream 5324 20942058 ~ 20958153 (-)
XLOC_012055 NA coding downstream 39949 20900590 ~ 20923528 (-)
XLOC_012053 ank3a coding downstream 66070 20701582 ~ 20897407 (-)
XLOC_012054 BX927186.1 coding downstream 260180 20703179 ~ 20703297 (-)
XLOC_012052 ccdc6a coding downstream 267479 20673963 ~ 20695998 (-)
XLOC_012058 bicc1a coding upstream 4721 20983798 ~ 21049260 (-)
XLOC_012059 ube2d1a coding upstream 71945 21051022 ~ 21057674 (-)
XLOC_012060 vsx1 coding upstream 84326 21063403 ~ 21066105 (-)
XLOC_012061 AL929290.1 coding upstream 151184 21130261 ~ 21130377 (-)
XLOC_012062 abhd12 coding upstream 175499 21154576 ~ 21200406 (-)
XLOC_012051 NA non-coding downstream 289586 20670398 ~ 20673891 (-)
XLOC_012049 NA non-coding downstream 351593 20610476 ~ 20611884 (-)
XLOC_012038 NA non-coding downstream 991433 19967166 ~ 19972044 (-)
XLOC_012063 NA non-coding upstream 234345 21213422 ~ 21220479 (-)
XLOC_012073 NA non-coding upstream 884578 21863655 ~ 21864182 (-)
XLOC_012082 NA non-coding upstream 1505728 22484805 ~ 22504384 (-)
XLOC_012083 BX511218.1 non-coding upstream 1542559 22521636 ~ 22525745 (-)

Expression


Co-expression Network