XLOC_012062 (abhd12)


Basic Information

Item Value
gene id XLOC_012062
gene name abhd12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 21154576 ~ 21200406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023794
atatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaacatattcattcattttcttgtcagcttagtccctttattaatctggggtcgccacagcagaacagccaacttattcagcacatgttttacacagcggatgtgattttttaataatttttttctacaaATTTCACATAGGATTTTTTATTCCAAATGTTAATATTTCCCAATATACTGCTTGTGTTGTATTTTGATCCACACAAAGAGacttaaaatacaaacaaaataaaggtTTCCAGACTATTTAAAACCATTGGGTTTTCATATAACTATTGTTTATAATcatacattatttgtattttaggcTTAATATTAGtcacttaaaatataattttattttaattctgtttTGCCACTGTTTAATGGCACGGTGTTCCTTCCGCTAAATAATCATTTGGTCACGTGTGAGGAAGCTTGCTGTTGCACGCGTTCTGTCAAAACAACAGATATCTACGATATCAAATCCCAGCAGAATGAACAGTGATGCGAAAGCGAAAAGGCAGCGCAGATCATGACAGCTCGTTCACGGCTACATTAACGGACGGCAGCTCCGATCTAAAGCAGTGCCACAAAGGGACAGACGCTGATACTGATCCTGGAGGCTCGGGGAAGGAGATGGGGAGACGGTGCAGGAGGGGTGGTTTGATGTGGAGGTTGCGGAGGATACTGATCTGGCTTCTGGGAATCTACATCGCCATCCCTGTTATCATCAAAGTCTGTCCATCAATACAAgcaaaattagtatttttaaacTTTGtgCGGGTACCGTATTTTATAGATTTGAAAAGACCGCAGGATCAGGGTATGAATCACACTCACAACTTCTACCTGCAGCCAGAGGAAGGAATCAACATTGGAGTGTGGCACACAGTACCAGCAGGCATGTGGAGGGAGGCTCAAGCTAAAGATGCTGAATGGTATGAGAAAAGCTTCCAGTCCAGTCACCCAGTCATCCTGTACCTCCACGGCAATGCTGGGACGAGagGAGGAGATCACAGAGTACAGCTTTATAagGTTCTCAGTTCATTAGGCTACCATGTAGTCACGTTTGATTATAGAGGTTGGGGAGACTCTGAGGGCAGTCCTTCAGAGAGAGGCATGACATCAGACGCTCTGTTCCTCTACCAGTGGATAAAACAGCGGATTGGACCGAAGCCGCTGTACATTTGGGGTCACTCGCTCGGCACAGGAGTGGCCACTAACCTTGTGAGACGGCTGTGTGACAGGGGAACGCCTCCAGACGCCCTGATTTTAGAGTCACCCTTTACAAACATCAGAGAGGAAGCCAAGAGCCATCCCTTCTCCATGGTTTACAGATATTTACCGGGATTTGACTGGTTCTTCCTGGATGCTATAAGTGCAAACGACATCCGATTTGCCAGTGATGAGAATGTGAACCACATCTCATGTCCAGTTCTGATCCTGCATGCCGAAGACGACACAGTTGTGCCCTTCCAGCTAGGGAAGAAGCTGTATGATTTGGCGGCTCAGAGTAAAAGTCTGAATGGTCATAAGGTCCAGTTCATCCCATTCTCCAGTTCTCTGGGCTACAGACACAAGTTCATCTACAAGAGCCCACAGCTACCAAATATACTGAGTGATTTTCTAAGAGCTCCTCATCCCCACGGTTAGTCCAGATCTCCTCTTTCCCGTGTCCCTGCGCATGAACTCAAGACACTCCGGCTCTTTCGCATTTGGTTGTTCACTTAAACCCTACCGAGGAAGGAAGTGCTCATGTTTTGAGAGCGTGACAGGATGATTtgactctcctcctcctcctctgttGTCATTGTGAATCTGAAGCGGCAGCTGGAGCACAAAGTATGCAAAATAATATGCAAATACGCACTGAAATAATGCTTTAGTCAGCAGAATGAAGTTTTAACGACTGCAGAAATTAAGGTCAAAGGGACGAAACGGGACACTGATGTCACAACTCGCTGACTGCCGttcactcttttttttaaatgagcgtatttaataacaataagaTCGACATTATCATGGACCTGAAAATCCACTCAATGTGAACAGCGAGTTATTTTTAGGTTCAACTTGAAATCtttcaaataaaatgtctttttctgtttgtatttttcttcccttttctgGTTTGTAATGGAGGATTTTGTGCTGCATTGGCATTAAAGCTCTGAGGTTGTTTTTATGGGATGTTcttgtgtgtgttatgtgtatgCCGTTGTGTTTGGTTGCTCCATATGCAACCCAGCTGCGATCACAACTGAATGAGCTTTTGATATCCATTACTATTGCTTTCATGCATTTTGTTGATTGATGCTTGTTTGCATGTCTGTTACAGGGCAACTGAATGTTGCACAATCAAAAGAGAACAAGAGTGTGTTCAAAATCTCtccttttttgttgtttatgtgggttaaatatatatttttcagtcTTTAAATTCACTTTGCACAttccaaaataataaatgaatacaattatTTACTTGCTAACACAATATGTTGAATACACAGATCAAAGCCTCAGTGAAAATATTGaaatcatttcttttttaatattacattaagtTCTGTGCTCTTTTCATTTTAGGACCCAGCTTCtctatttgtttaaaatgtgttttttttatggtttttTGAGTCTATTTTGatatacacagtgctcagcatatatgagtacagccctcacaaatctgtattttaaattgatattttctataggatgcttatatctgtgcatatacattacatcagcactgaagccaaatttggagctAATCTAGctaaataacttacgataacagtccaaaaatgaGTAGCCCAAGTTTATGTTTTAGGGGaagtatattaaataaaaatcaagattttttttttgaaaaacatagTTGAAATCttgtagtttttttaaaatgtattctttatgtTTCTAAAGATATTCTGTGAAATccgtttaataaatgttttgtttaaatgcaccaaattatATTACCTTAATTCACAGagaaattgttaaaaatattaatattcaaaatggggtgtgctcaattatgctgagcactttatttATGTTATGTATTATGTTTCATAGCTGAGTTTACTTCAGTTTTTAGCAGTGTTgtgggtaacgcattacaagtagcGCGAGTCacgtaataatattatttttttaagaaacaagtaacacattacttttaaaaattaggtaataatatttgagttaaagGAAATGTTTGATAATCTTGCTGTTAAAAATGAATTTATATAATCAATGGTAAAGCAGAGACTTAAAGTGTGATCTCAGTCGCTTTATAAATGGATAGAATTAGATGAAAATATTGGATGTCTTTGGCTTTGGAAAGATGACTGTAATTTAAAAGTCaatgtaatgttatttttattattattattaatattattattattatatgcgcACACACTTTggtcaatttaaatgtattttttatagtatagtattttattttaaatgtaatttctgtttaacaaatgtTGGAGTGGAAAAGCACATTCTGAAATATTATGTAAGTTAATATTCTGTATTGTTTGCTgggttttataatataattaaaatcaatgaatacaaagttgaaaaaaaaaaatatttaagttactttttaaaaaaatgtaacgtgagttactttttaatttggttaattcacttaaaaaataaactgCTGGATTATATAAATGAAAACTGATTTTACCTCACTAATGAGATGAAATGTGTAAAAGCAGCAAACacttgctttaaactttcattaatctatATATACGGCATAGAGCTCTGCAGTCAGGAAGTTCCCtaaagataacattatcctacattcattttttatgtgttttattaagctaaataaaggttatacagtgtgatgttaattgcagagctcatCTATATAAAAAAGGAAGGAAAAACCCCTGCTAAAAGAGATCAACCCTCAGCTAGGTCagaaaagtaacgcaaaagtaacttaaggcattacttaccataaaaagtaactagttactcaatattgtaatgcattactttcaaaagtaactttccccaacactagtATTTAGTGCATTTGTTTCTTCAGAAATAATCCCAAGATgccaattgatttatttaaattgtatattcAAAGCATTTGTGCTGTTTATTTTTGAGCACACTGTCATACTTTTTTcagaaagtgtaaaaaaaaatcacttggttgaaataaatagaaatgtttttaactttactgttacttttgatcagtttaatgcatccttgataaataaaattatttcttcctcgtttagtttttttaatgccaaaaagaaaataaactcggcccaaacttttgaatggaaacatttgaaaaaaattggAATCGTGTAATTTCTAAATGACCCAaaatgtatagttgaagtcagaattattagcccccctgaatttttagcacccctgaattattcgcacccgtttattttttcccccaatttctgtttaaggtagagaagattttttcagcacatttctaaacataatagttttaataactcatctctaatcactgatttattttatatttgccatgatgacagtaaatattattttactggatattttttgagacaattctatacagcttcagtgacatttaaaggcttaattaggttaactagacgcaggttaggtaattaggcaagtcagtgtataatgatggtttgttctgtagactgtcgggaaaacatatagcttaaagaggctaataattttgtccttaaaatggtttttaaaaactgcttttattgtgactgaaataaaacaactaagactttttccagaagaaaaaatattatcagacatactgtgaaaatttccttgctctgtaaaacatcatttgggaaatattaaaaaaagaaaaaaatgtttaaaggggggctaataattctgaattcaactgtacttTAAGTGTATATCTTCCAATGGTTTTAATTGAATTCCCAATATCTAAATATATTGTAAAAGCTTTTTAACATGCACAGTTTTGAAGATTTACATTAAATGTGGGCAATACTCAACACTGAGATTCAAACATTAAGCAATAAAGGCTCATCTTTGTTTTGCTCTGACATCTTTTCTTGTATATATGATGAATATGTTTCCTTCACATTGTGCACTGACCATCTGATAATGATTCATCTGCAAATGAGTATCTCAGACTGTAATGCAGGCCGTTTGAGCAGATCTGCTGTATTGTTGCTGTGTGTCTGGTTGTTTTTTGAGCTGATAATGATAGCGAGGTTATGTGTGCATGCAAGCTTCAATCGTAGATCTAGACTGCCTCTGTTTGTACACCACCGATGTTATTCTCACAAATAGTATCACAATGTTTTTCTTCATTGTTTGATTTTCCTCTGCCGGTGTGTTAGATGTGAGATCATGATGGTctgatgcagtggaaaaaaaaaacaccaaaatatCTTAGCTTGCGAAGGACTGTGTAGAATTGATGTAGAAATGATCATGTTTAGAGAGTTTATTAGATCTAGAAGTGCAATAATCTAAAGCTGAAGGACAATATGTAAGACcaaaaaaacacatgcatatatatttaaaaatgacgaATTCATTTGTACTAGAATGTAAAAATGGACCACAGTATATTTGGATGTCACTGCTCTGAACACAGATTTGATTCTGCCGTCTTTGTTGATGTTGACCAAACTTTGCATATTTGAATTCAACATTTCgtatatttaattacttttttgtttactttgtaaTGAAAATTGAAATACTGCCCAGTTATTTCAGCAGCAACTGTTACTTTTTGCGGACGATATCATGAGTGGTTTACAATGTTTGTTTTCTTCTAAGCTGCTAAATCTTACTGGACACATGCACACCTGTTAGTACAGTATGTTTGTTTGTAAACAATAAAGGactgaaaaaaaagctttctggtggccatcatttatttacagtgctgttacagtttttt
>TCONS_00023795
CTGTGTTCGCAGGAACGCCTCCAGACGCCCTGATTTTAGAGTCACCCTTTACAAACATCAGAGAGGAAGCCAAGAGCCATCCCTTCTCCATGGTTTACAGATATTTACCGGGATTTGACTGGTTCTTCCTGGATGCTATAAGTGCAAACGACATCCGATTTGCCAGTGATGAGAATGTGAACCACATCTCATGTCCAGTTCTGATCCTGCATGCCGAAGACGACACAGTTGTGCCCTTCCAGCTAGGGAAGAAGCTGTATGATTTGGCGGCTCAGAGTAAAAGTCTGAATGGTCATAAGGTCCAGTTCATCCCATTCTCCAGTTCTCTGGGCTACAGACACAAGTTCATCTACAAGAGCCCACAGCTACCAAATATACTGAGTGATTTTCTAAGAGCTCCTCATCCCCACGGTTAGTCCAGATCTCCTCTTTCCCGTGTCCCTGCGCATGAACTCAAGACACTCCGGCTCTTTCGCATTTGGTTGTTCACTTAAACCCTACCGAGGAAGGAAGTGCTCATGTTTTGAGAGCGTGACAGGATGATTtgactctcctcctcctcctctgttGTCATTGTGAATCTGAAGCGGCAGCTGGAGCACAAAGTATGCAAAATAATATGCAAATACGCACTGAAATAATGCTTTAGTCAGCAGAATGAAGTTTTAACGACTGCAGAAATTAAGGTCAAAGGGACGAAACGGGACACTGATGTCACAACTCGCTGACTGCCGttcactcttttttttaaatgagcgtatttaataacaataagaTCGACATTATCATGGACCTGAAAATCCACTCAATGTGAACAGCGAGTTATTTTTAGGTTCAACTTGAAATCtttcaaataaaatgtctttttctgtttgtatttttcttcccttttctgGTTTGTAATGGAGGATTTTGTGCTGCATTGGCATTAAAGCTCTGAGGTTGTTTTTA

Function

symbol description
abhd12 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Acts upstream of or within myelination; sensory system development; and swimming behavior. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; gonad; liver; muscle; and nervous system. Used to study PHARC syndrome. Human ortholog(s) of this gene implicated in PHARC syndrome. Orthologous to human ABHD12 (abhydrolase domain containing 12, lysophospholipase).

GO:

id name namespace
GO:0052651 monoacylglycerol catabolic process biological_process
GO:0006629 lipid metabolic process biological_process
GO:0043010 camera-type eye development biological_process
GO:0006660 phosphatidylserine catabolic process biological_process
GO:0042552 myelination biological_process
GO:0009395 phospholipid catabolic process biological_process
GO:0048899 anterior lateral line development biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0046464 acylglycerol catabolic process biological_process
GO:0010842 retina layer formation biological_process
GO:0036269 swimming behavior biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047372 acylglycerol lipase activity molecular_function
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004620 phospholipase activity molecular_function
GO:0004622 lysophospholipase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-060929-268 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Acts upstream of or within myelination; sensory system development; and swimming behavior. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; gonad; liver; muscle; and nervous system. Used to study PHARC syndrome. Human ortholog(s) of this gene implicated in PHARC syndrome. Orthologous to human ABHD12 (abhydrolase domain containing 12, lysophospholipase).

Ensembl:

ensembl_id ENSDARG00000071004

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023794 False 6067 mRNA 0.34 14 21154576 21200406
TCONS_00023795 True 951 mRNA 0.44 5 21158383 21162821

Neighbor

gene id symbol gene type direction distance location
XLOC_012061 AL929290.1 coding downstream 24199 21130261 ~ 21130377 (-)
XLOC_012060 vsx1 coding downstream 88471 21063403 ~ 21066105 (-)
XLOC_012059 ube2d1a coding downstream 96902 21051022 ~ 21057674 (-)
XLOC_012058 bicc1a coding downstream 105316 20983798 ~ 21049260 (-)
XLOC_012057 phyhipla coding downstream 175499 20963477 ~ 20979077 (-)
XLOC_012063 NA coding upstream 13016 21213422 ~ 21220479 (-)
XLOC_012064 hspa12a coding upstream 20528 21220934 ~ 21280185 (-)
XLOC_012065 shtn1 coding upstream 110995 21311401 ~ 21368775 (-)
XLOC_012066 atp6v1ba coding upstream 171885 21372291 ~ 21418340 (-)
XLOC_012067 vax1 coding upstream 232287 21432693 ~ 21442279 (-)
XLOC_012055 NA non-coding downstream 231048 20900590 ~ 20923528 (-)
XLOC_012054 BX927186.1 non-coding downstream 451279 20703179 ~ 20703297 (-)
XLOC_012051 NA non-coding downstream 480685 20670398 ~ 20673891 (-)
XLOC_012049 NA non-coding downstream 542692 20610476 ~ 20611884 (-)
XLOC_012073 NA non-coding upstream 663249 21863655 ~ 21864182 (-)
XLOC_012082 NA non-coding upstream 1284399 22484805 ~ 22504384 (-)
XLOC_012083 BX511218.1 non-coding upstream 1321230 22521636 ~ 22525745 (-)
XLOC_012086 NA non-coding upstream 1486764 22687170 ~ 22689787 (-)

Expression


Co-expression Network