XLOC_012064 (hspa12a)


Basic Information

Item Value
gene id XLOC_012064
gene name hspa12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 21220934 ~ 21280185 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023796
TACAGGAGCTGAGTGACCAAGCAGGGGCAGAGTTTGATAATGCTGATGTCAGATGGGTCATCACTGTACCAGCCATCTGGAAGATGCCAGCCAAGCAGTTTATGAGAGAAGCAGCCTACAAGGCTGCTCTGGTTACTCGCGAGAATCCTGATCAGCTGATCATCGCTCTAGAACCAGAAGCTGCATCTATTTACTGCAGGAAGCTGCGCCTCCACCAAATGGTCGACCTGGGGAGCAAAACAGCCCTGAACGGTTACAGTCCGACTGACAATGCTGGGGTGGGAATGACCCAGGCTAAGGAGCATGTGCGCCGTAACCGACAGAGCCGCACCTTTCTGGTGGAGAATGTCATAGGAGAGCTCTGGTCTGAACTCGCTGAAGGTGATCGTTATGTGGTGGTGGATTGTGGAGGAGGAACAGTGGATCTCACTGTACATCAGATCCGGCTGCCGGAGGGACACTTGAAGGAGCTTTACAAAGCTTCAGGAGGTCCATATGGCTCTATTGGTATAGATTATGAATTTGAGAAGCTCCTTTGTAAGATATTCGGGCAGGATTTCATCGACCAGTTTAAGATCAAGCGTCCGGCCGCCTGGGTGGATCTGATGATTGCATTTGAATCCCGTAAAAGGGCCGCAACTCCTGACCGAAGCAATCCTCTGAATATTAACCTGCCCTTCTCTTTCATCGACTACTACAAGAAGTTCAGGGGACACAGTGTGGAGCACGCGCTGAGAAAGAGCAATGTGGACTTTGTGAAGTGGTCTTCACAGGGCATGTTGAGGATGAGCCCAGACGCGATGAATGCCCTGTTTAAACCAACTATAGACCACATTATACAGCACCTGACTGAGTTATTTGACAGGCCTGAAGTGACAGACATCAAGTTCCTCTTTCTAGTGGGTGGATTCGCAGAGTCTCCACTGCTGCAGCAGGCGGTCCAGAACATGCTTCAGGGCCGCAGCCGAATCATTATTCCGCACGACGTGGGTCTGACCATCCTGAAGGGGGCGGTGTTGTTCGGCCTGGATCCAAGCATTATAAAAGTGCGCCGCTCTCCACTCACCTACGGCGTCGGCGTCCTCAACCGATTTGTGGAAGGCAAACACCCACCTGAAAAGATGCTGGTGAAGGACGGTATGCGCTGGTGCACCGACGTCTTCGACACGTTTATCTCTGCCGATCAGTCGGTGGCGCTGGGTGAAACGGTGAAGCGCAGCTATACACCAGCCAAGCCATCGCAGCAGGTGATCGTCATCCATGTGTACTGCTCAGAAAAAGAGTCGGTCACTTTCATCACGGACCCAGGCGTGAGGAAGTGCGGCTCGCTGAAGCTGGATGTGAGCGGTACTGAGAGTCCAGCGGCACGCAGAGAGATCCAGACACTCATGCAGTTCGGAGACACCGAGATCAGAGCCATGGCTGTCGACGTGGCCACATCTCGCACTGTCAAAGCGAGCATCGATTTCCTTGGTCAGTAGATGAggaaaacacacactgcagacaaaCTCAGTATTTAGTCATGTTTTCCAGTCAAAAATCTTTAAATCATCCTCaaaacgaatatatatatatatatctttttaaaatttttattctggaaaaagtTCATTTATCCAACAAGGATACGCTGTAAAAACCGAAtcgttttttaaaatataatttataataacttttttttaaagcaggcctgtagccagaggcgttcgggtggttcaaaagacccacccctcaatgacaaagatccagaatttgctttatacatgagctcatttgttctattttgactgctacaccattatgaattgtaaaaaaaaaaaaaaaaa
>TCONS_00023797
ACACTTCTCTTCTCTAGACGAAAAAACTTAACTGTAGGTCAAATTCGAGACGGGATACTCTTTAAATGTGCTCTAAAACGTTATATTCTTCAAGAATTTTGGGCTGGAGTTTGGAAGTTTGGCGATAATAAGAACGTAGTGAAGAAACCGAGAAACGGGACGTAAGAAGCACTCTTGAGAAGTAACAGGAGCTCTCTGAATAGTCTGATGACCCGCGCAAAAAGTTAGTAAGTTGGATGTTTACAGGAATAAGAAAACCTGAAGATTTAAATGATGACTGAGAAAGAGTTGGAGATTGACGACCTCATAACAGATGCAATGGCCACTCCATCTCCAGCCAAGAGTATGGGCGACCCAGGCATCACGCCACTTTCCCCCACACACATACTGAAGGACTCTGAGGAGAATGAGCCTCCCAGACACCACTTTGTGGTGGTGGTGGCCATCGACTTTGGCACCACCTCCAGCGGCTACGCCTATGCCTTCACTAAAGAGCCAGAGTGCATTCACACTATGAGGCGCTGGGAGGGCGGAGACCCAGGGGTGTCCAATCAGAAGACACCCACCACTATTCTACTGACCCCAGACAAAAAGTTCCACAGTTTTGGTTATGCAGCACGGGATTTTTACCATGACCTGGATCCTACTGAGTCTAAACAGTGGCTGTATCTGGAGAAGTTTAAAATGAAACTACACACCACTGCAAATCTGTCCATCGATACAGATCTGCATGCAGCCAATGGAAAGAAGGTGAAAGCTCTGGATATTTTTGCTTATGCCCTGGCCTTTTTTAAGGAGCAGGCTCTAAAGGAGCTGAGTGACCAAGCAGGGGCAGAGTTTGATAATGCTGATGTCAGATGGGTCATCACTGTACCAGCCATCTGGAAGATGCCAGCCAAGCAGTTTATGAGAGAAGCAGCCTACAAGGCTGCTCTGGTTACTCGCGAGAATCCTGATCAGCTGATCATCGCTCTAGAACCAGAAGCTGCATCTATTTACTGCAGGAAGCTGCGCCTCCACCAAATGGTCGACCTGGGGAGCAAAACAGCCCTGAACGGTTACAGTCCGACTGACAATGCTGGGGTGGGAATGACCCAGGCTAAGGAGCATGTGCGCCGTAACCGACAGAGCCGCACCTTTCTGGTGGAGAATGTCATAGGAGAGCTCTGGTCTGAACTCGCTGAAGGTGATCGTTATGTGGTGGTGGATTGTGGAGGAGGAACAGTGGATCTCACTGTACATCAGATCCGGCTGCCGGAGGGACACTTGAAGGAGCTTTACAAAGCTTCAGGAGGTCCATATGGCTCTATTGGTATAGATTATGAATTTGAGAAGCTCCTTTGTAAGATATTCGGGCAGGATTTCATCGACCAGTTTAAGATCAAGCGTCCGGCCGCCTGGGTGGATCTGATGATTGCATTTGAATCCCGTAAAAGGGCCGCAACTCCTGACCGAAGCAATCCTCTGAATATTAACCTGCCCTTCTCTTTCATCGACTACTACAAGAAGTTCAGGGGACACAGTGTGGAGCACGCGCTGAGAAAGAGCAATGTGGACTTTGTGAAGTGGTCTTCACAGGGCATGTTGAGGATGAGCCCAGACGCGATGAATGCCCTGTTTAAACCAACTATAGACCACATTATACAGCACCTGACTGAGTTATTTGACAGGCCTGAAGTGACAGACATCAAGTTCCTCTTTCTAGTGGGTGGATTCGCAGAGTCTCCACTGCTGCAGCAGGCGGTCCAGAACATGCTTCAGGGCCGCAGCCGAATCATTATTCCGCACGACGTGGGTCTGACCATCCTGAAGGGGGCGGTGTTGTTCGGCCTGGATCCAAGCATTATAAAAGTGCGCCGCTCTCCACTCACCTACGGCGTCGGCGTCCTCAACCGATTTGTGGAAGGCAAACACCCACCTGAAAAGATGCTGGTGAAGGACGGTATGCGCTGGTGCACCGACGTCTTCGACACGTTTATCTCTGCCGATCAGTCGGTGGCGCTGGGTGAAACGGTGAAGCGCAGCTATACACCAGCCAAGCCATCGCAGCAGGTGATCGTCATCCATGTGTACTGCTCAGAAAAAGAGTCGGTCACTTTCATCACGGACCCAGGCGTGAGGAAGTGCGGCTCGCTGAAGCTGGATGTGAGCGGTACTGAGAGTCCAGCGGCACGCAGAGAGATCCAGACACTCATGCAGTTCGGAGACACCGAGATCAGAGCCATGGCTGTCGACGTGGCCACATCTCGCACTGTCAAAGCGAGCATCGATTTCCTTGGTCAGTAGATGAggaaaacacacactgcagacaaaCTCAGTATTTAGTCATGTTTTCCAGTCAAAAATCTTTAAATCATCCTCaaaacgaatatatatatatatatctttttaaaatttttattctggaaaaagtTCATTTATCCAACAAGGATACGCTGTAAAAACCGAAtcgttttttaaaatataatttataataacttttttttaaagcaggcctgtagccagaggcgttcgggtggttcaaaagacccacccctcaatgacaaagatccagaatttgctttatacatgagctcatttgttctattttgactgctacaccattatgaattgt
>TCONS_00023798
ATCCTAAATTATGACAATAGGCTACATTTGACGAATATCTATAGTAGTCCTGGAAAGCACTTTCactgattgtaaaaaaaaaaacatctttcacATTCCATGTAAACATATACCAActattgcaatttttaaaaagatttagccTGAATCTTTATTATGACGTGTTATAGCATCTGACTTTAAAAGCGCAATGTGGACTTAAATGACTGAGATAGTAGCGGTGCAGAGTTGGGTCACGTGGTCTCGCTCTGGGAGCTTTGAGTCAATGCAGCAAAAGTCTGCACgctccatcatcatcatcccagGTGAAGCCGGAACGAGATGCAATGGCCACTCCATCTCCAGCCAAGAGTATGGGCGACCCAGGCATCACGCCACTTTCCCCCACACACATACTGAAGGACTCTGAGGAGAATGAGCCTCCCAGACACCACTTTGTGGTGGTGGTGGCCATCGACTTTGGCACCACCTCCAGCGGCTACGCCTATGCCTTCACTAAAGAGCCAGAGTGCATTCACACTATGAGGCGCTGGGAGGGCGGAGACCCAGGGGTGTCCAATCAGAAGACACCCACCACTATTCTACTGACCCCAGACAAAAAGTTCCACAGTTTTGGTTATGCAGCACGGGATTTTTACCATGACCTGGATCCTACTGAGTCTAAACAGTGGCTGTATCTGGAGAAGTTTAAAATGAAACTACACACCACTGCAAATCTGTCCATCGATACAGATCTGCATGCAGCCAATGGAAAGAAGGTGAAAGCTCTGGATATTTTTGCTTATGCCCTGGCCTTTTTTAAGGAGCAGGCTCTAAAGGAGCTGAGTGACCAAGCAGGGGCAGAGTTTGATAATGCTGATGTCAGATGGGTCATCACTGTACCAGCCATCTGGAAGATGCCAGCCAAGCAGTTTATGAGAGAAGCAGCCTACAAGGCTGCTCTGGTTACTCGCGAGAATCCTGATCAGCTGATCATCGCTCTAGAACCAGAAGCTGCATCTATTTACTGCAGGAAGCTGCGCCTCCACCAAATGGTCGACCTGGGGAGCAAAACAGCCCTGAACGGTTACAGTCCGACTGACAATGCTGGGGTGGGAATGACCCAGGCTAAGGAGCATGTGCGCCGTAACCGACAGAGCCGCACCTTTCTGGTGGAGAATGTCATAGGAGAGCTCTGGTCTGAACTCGCTGAAGGTGATCGTTATGTGGTGGTGGATTGTGGAGGAGGAACAGTGGATCTCACTGTACATCAGATCCGGCTGCCGGAGGGACACTTGAAGGAGCTTTACAAAGCTTCAGGAGGTCCATATGGCTCTATTGGTATAGATTATGAATTTGAGAAGCTCCTTTGTAAGATATTCGGGCAGGATTTCATCGACCAGTTTAAGATCAAGCGTCCGGCCGCCTGGGTGGATCTGATGATTGCATTTGAATCCCGTAAAAGGGCCGCAACTCCTGACCGAAGCAATCCTCTGAATATTAACCTGCCCTTCTCTTTCATCGACTACTACAAGAAGTTCAGGGGACACAGTGTGGAGCACGCGCTGAGAAAGAGCAATGTGGACTTTGTGAAGTGGTCTTCACAGGGCATGTTGAGGATGAGCCCAGACGCGATGAATGCCCTGTTTAAACCAACTATAGACCACATTATACAGCACCTGACTGAGTTATTTGACAGGCCTGAAGTGACAGACATCAAGTTCCTCTTTCTAGTGGGTGGATTCGCAGAGTCTCCACTGCTGCAGCAGGCGGTCCAGAACATGCTTCAGGGCCGCAGCCGAATCATTATTCCGCACGACGTGGGTCTGACCATCCTGAAGGGGGCGGTGTTGTTCGGCCTGGATCCAAGCATTATAAAAGTGCGCCGCTCTCCACTCACCTACGGCGTCGGCGTCCTCAACCGATTTGTGGAAGGCAAACACCCACCTGAAAAGATGCTGGTGAAGGACGGTATGCGCTGGTGCACCGACGTCTTCGACACGTTTATCTCTGCCGATCAGTCGGTGGCGCTGGGTGAAACGGTGAAGCGCAGCTATACACCAGCCAAGCCATCGCAGCAGGTGATCGTCATCCATGTGTACTGCTCAGAAAAAGAGTCGGTCACTTTCATCACGGACCCAGGCGTGAGGAAGTGCGGCTCGCTGAAGCTGGATGTGAGCGGTACTGAGAGTCCAGCGGCACGCAGAGAGATCCAGACACTCATGCAGTTCGGAGACACCGAGATCAGAGCCATGGCTGTCGACGTGGCCACATCTCGCACTGTCAAAGCGAGCATCGATTTCCTTGGTCAGTAG
>TCONS_00023799
TACAGGAGCTGAGTGACCAAGCAGGGGCAGAGTTTGATAATGCTGATGTCAGATGGGTCATCACTGTACCAGCCATCTGGAAGATGCCAGCCAAGCAGTTTATGAGAGAAGCAGCCTACAAGGCTGCTCTGGTTACTCGCGAGAATCCTGATCAGCTGATCATCGCTCTAGAACCAGAAGCTGCATCTATTTACTGCAGGAAGCTGCGCCTCCACCAAATGGTCGACCTGGGGAGCAAAACAGCCCTGAACGGTTACAGTCCGACTGACAATGCTGGGGTGGGAATGACCCAGGCTAAGGAGCATGTGCGCCGTAACCGACAGAGCCGCACCTTTCTGGTGGAGAATGTCATAGGAGAGCTCTGGTCTGAACTCGCTGAAGGTGATCGTTATGTGGTGGTGGATTGTGGAGGAGGAACAGTGGATCTCACTGTACATCAGATCCGGCTGCCGGAGGGACACTTGAAGGAGCTTTACAAAGCTTCAGGAGGTCCATATGGCTCTATTGGTATAGATTATGAATTTGAGAAGCTCCTTTGTAAGATATTCGGGCAGGATTTCATCGACCAGTTTAAGATCAAGCGTCCGGCCGCCTGGGTGGATCTGATGATTGCATTTGAATCCCGTAAAAGGGCCGCAACTCCTGACCGAAGCAATCCTCTGAATATTAACCTGCCCTTCTCTTTCATCGACTACTACAAGAAGTTCAGGGGACACAGTGTGGAGCACGCGCTGAGAAAGAGCAAGTGAGTGTCAAAAATACAGGCAGAAATCCCCTTTTATCACAGTCCAGTCAAGCTGCTTCATATGCAGATTACTCATATGATCTACCCACCTTCATGTTTCTGTCAACAATACAGAAGAGAAACAATTTGTGCTCATCAATCAAACAAAACTATCATACCAAAGAGGAGTTTAATATGACAGACAATGAATTGAtggtatttatacatttattgacTAAGGTGTAATGTTTTTACATACATGTTCTCAACTGACATAAAATCATTAACGTTTcttgcaaa
>TCONS_00023800
AATGCAGCAAAAGTCTGCACgctccatcatcatcatcccagGTGAAGCCGGAACGAGATGCAATGGCCACTCCATCTCCAGCCAAGAGTATGGGCGACCCAGGCATCACGCCACTTTCCCCCACACACATACTGAAGGACTCTGAGGAGAATGAGCCTCCCAGACACCACTTTGTGGTGGTGGTGGCCATCGACTTTGGCACCACCTCCAGCGGCTACGCCTATGCCTTCACTAAAGAGCCAGAGTGCATTCACACTATGAGGCGCTGGGAGGGCGGAGACCCAGGGGTGTCCAATCAGAAGACACCCACCACTATTCTACTGACCCCAGACAAAAAGTTCCACAGTTTTGGTTATGCAGCACGGGATTTTTACCATGACCTGGATCCTACTGAGTCTAAACAGTGGCTGTATCTGGAGAAGTTTAAAATGAAACTACACACCACTGCAAATCTGTCCATCGATACAGATCTGCATGCAGCCAATGGAAAGAAGGTGAAAGCTCTGGATATTTTTGCTTATGCCCTGGCCTTTTTTAAGGAGCAGGCTCTAAAGGAGCTGAGTGACCAAGCAGGGGCAGAGTTTGATAATGCTGATGTCAGATGGGTCATCACTGTACCAGCCATCTGGAAGATGCCAGCCAAGCAGTTTATGAGAGAAGCAGCCTACAAGGCTGCTCTGGTTACTCGCGAGAATCCTGATCAGCTGATCATCGCTCTAGAACCAGAAGCTGCATCTATTTACTGCAGGAAGCTGCGCCTCCACCAAATGGTCGACCTGGGGAGCAAAACAGCCCTGAACGGTTACAGTCCGACTGACAATGCTGGGGTGGGAATGACCCAGGCTAAGGAGCATGTGCGCCGTAACCGACAGAGCCGCACCTTTCTGGTGGAGAATGTCATAGGAGAGCTCTGGTCTGAACTCGCTGAAGGTGATCGTTATGTGGTGGTGGATTGTGGAGGAGGAACAGTGGATCTCACTGTACATCAGATCCGGCTGCCGGAGGGACACTTGAAGGAGCTTTACAAAGCTTCAGGAGGTCCATATGGCTCTATTGGTATAGATTATGAATTTGAGAAGCTCCTTTGTAAGATATTCGGGCAGGATTTCATCGACCAGTTTAAGATCAAGCGTCCGGCCGCCTGGGTGGATCTGATGATTGCATTTGAATCCCGTAAAAGGGCCGCAACTCCTGACCGAAGCAATCCTCTGAATATTAACCTGCCCTTCTCTTTCATCGACTACTACAAGAAGTTCAGGGGACACAGTGTGGAGCACGCGCTGAGAAAGAGCAAGTGAGTGTCAAAAATACAGGCAGAAATCCCCTTTTATCACAGTCCAGTCAAGCTGCTTCATATGCAGATTACTCATATGATCTACCCACCTTCATGTTTCTGTCAACAATACAGAAGAGAAACAATTTGTGCTCATCAATCAAACAAAACTATCATACCAAAGAGGAGTTTAATATGACAGACAATGAATTGAtggtatttatacatttattgacTAAGGTGTAATGTTTTTACATACATGTTCTCAACTGACATAAAATCATTAACGTTTcttg
>TCONS_00023801
ACACTTCTCTTCTCTAGACGAAAAAACTTAACTGTAGGTCAAATTCGAGACGGGATACTCTTTAAATGTGCTCTAAAACGTTATATTCTTCAAGAATTTTGGGCTGGAGTTTGGAAGTTTGGCGATAATAAGAACGTAGTGAAGAAACCGAGAAACGGGACGTAAGAAGCACTCTTGAGAAGTAACAGGAGCTCTCTGAATAGTCTGATGACCCGCGCAAAAAGTTAGTAAGTTGGATGTTTACAGGAATAAGAAAACCTGAAGATTTAAATGATGACTGAGAAAGAGTTGGAGATTGACGACCTCATAACAG

Function

symbol description
hspa12a Orthologous to human HSPA12A (heat shock protein family A (Hsp70) member 12A).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-031001-1 Orthologous to human HSPA12A (heat shock protein family A (Hsp70) member 12A).

Ensembl:

ensembl_id ENSDARG00000070603

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023796 False 1826 mRNA 0.49 7 21220934 21249651
TCONS_00023797 False 2614 mRNA 0.48 12 21220951 21280185
TCONS_00023798 False 2294 mRNA 0.50 12 21221279 21278846
TCONS_00023799 False 1024 mRNA 0.46 5 21232815 21249651
TCONS_00023800 False 1569 mRNA 0.48 10 21232819 21278582
TCONS_00023801 True 313 processed_transcript 0.39 1 21279873 21280185

Neighbor

gene id symbol gene type direction distance location
XLOC_012063 NA coding downstream 455 21213422 ~ 21220479 (-)
XLOC_012062 abhd12 coding downstream 20528 21154576 ~ 21200406 (-)
XLOC_012061 AL929290.1 coding downstream 90557 21130261 ~ 21130377 (-)
XLOC_012060 vsx1 coding downstream 154829 21063403 ~ 21066105 (-)
XLOC_012059 ube2d1a coding downstream 163260 21051022 ~ 21057674 (-)
XLOC_012065 shtn1 coding upstream 31216 21311401 ~ 21368775 (-)
XLOC_012066 atp6v1ba coding upstream 92106 21372291 ~ 21418340 (-)
XLOC_012067 vax1 coding upstream 152508 21432693 ~ 21442279 (-)
XLOC_012068 gpr26 coding upstream 327054 21607239 ~ 21617618 (-)
XLOC_012069 hmx2 coding upstream 501858 21782043 ~ 21784152 (-)
XLOC_012055 NA non-coding downstream 297406 20900590 ~ 20923528 (-)
XLOC_012054 BX927186.1 non-coding downstream 517637 20703179 ~ 20703297 (-)
XLOC_012051 NA non-coding downstream 547043 20670398 ~ 20673891 (-)
XLOC_012073 NA non-coding upstream 583470 21863655 ~ 21864182 (-)
XLOC_012082 NA non-coding upstream 1204620 22484805 ~ 22504384 (-)
XLOC_012083 BX511218.1 non-coding upstream 1241451 22521636 ~ 22525745 (-)
XLOC_012086 NA non-coding upstream 1406985 22687170 ~ 22689787 (-)
XLOC_012087 BX548077.1 non-coding upstream 1505989 22786174 ~ 22786291 (-)

Expression


Co-expression Network