CI01000299_04456420_04468754


Basic Information

Item Value
gene id CI01000299_04456420_04468754
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4456229 ~ 4469450 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04456420_04468754.mRNA
AGCTTGCACTTGGATCTACCATCCTGTCGTTTCGATCTCAGACATTACAAATGAATTCATAAAGCGCAATATCACACAGAGAAAAAGACAGTAGGTTAGCCTACTCTTGAAAAATTAATACCAAGTAGCCTATAATTAATTGTATGAAATGTAGGCACCTACCGGTAGAAACATAATAGGCCTAATAATTAATAATTAATAATAATAAACAATAATTTGGTGCCTCTGACCATTATTATTACCTATAATTATTATTATTATTATTATTATTTTACTACATTATCATGTAAATCTAGAAACTGAATTAATACCAACATGAAATTAAATTAAGGACATGCATCAGAAAAATTGGGAATGTTGGACAATAAATATATAACAGAATATAACAGCTTGACAGTAAACTGTTTTTGCAGTATTGTCTTATATTAATGTCCGTTAAAGCAAGACTATGTAAACAAAAAATCACAGCCACTGTGTCCAAAAGTGGGAATTATGGGATAACAGACACAGCAATCCTTCATGTTCTATAAGATCATCATATTTGTAGCGTGATCCAGGGGATTAAAACGTATATATTTCAGACCTAGTGGAGTAATTTACTATTACTATTACTGCACTAGGTCTGAAATATTTTTCCTCTTTCCTCCAGTTGATTGTGAAAAAGGTTCTGGAACATTTGCTGTGTTCAGAAGAGCAATGATCTTCCAATACAGTCTGTTATTGATCCTCTGTGGCTTCACTGCACTCTCTGTCTCAACAGAGACATGTGGAAAAGAACTACAAGAGGGAACGTCCTGCATCATTAAGCTACCAGAAAAATACAATGACAAATCTAATGACATAAAATGGACCCATTCCTCCAGTGACGCCATAATTCAGAGGAAAAACAATAAGATGAAGACAAACACTCCAGGTTTAACAATGGAAGAAGATGGATCATTAAGATTTCAAAGTGTGAAGGCCCAGGTCTTGGTAAACACTTTGGCTTGGATTTCTGGATCATGGTGCAAAAAGCTCCAACAAGGCCAAGATAAGACAGAGTTCACGCTAGCAGATCTTACCCCAGTTGATTGTGAAAAAGGTTCTGGAACATTTGCTGTGTTCAGAAGAGCAATGATCTTCCAGCACAGTCTGATATTGTTCCTCTGTGGCTTCACTGCACTCTCTGAGACATGTGGAAAAGAACTACAAGTGGGAACGTCCTGCATCATTAAGCTACCAGAAAAATCCAATGAAAAATCCAATGACATAAAATGGGCCCATTTCTCCAGTGACGCCGTAATTCAGAGGAAAAACAATAAGGTGAAGTCAAACACTCCAGGTTTAACAATGGAAGAAGATGGATCATTAAGATTTCAAAGTGTTAGTCTGAAGGACACGGGCACATATATATACACTGTTACTAGTTCTGATGGTACAGAGATTGATAAAGGAGAAGCAGAAATTAAAGTATATGAAAAGGTCCCTAAACCTACTGTGAAGATCAACTGCACCGCTGATGGGAATGCTACTCTCACCTGTGACGTGGAAAACAATAAAGATCTGAGTTTGAATGTATCCTGGTATGAAGATGGAAAACTCATCCAGAATGAAATAAATCCTCAAGTGTTCTTGTCATCTACTCAAGTACAGGAGTATAAAACATACTCATGTGAGACACACAATCCTGTCAGAGTTAAAAGTGAGAGTGTTACTGTATCATGTGGAAACCTTGTCCTTGGCTTTGACTGGATCATATTGAGCATCCTAGCCGGCGGAGGAGCCCTTCTGCTGCTAATATGTGTTCTCCTCATCTGTGTGTGTCGCAGACGTCAGCGACGCAAAAAGTATCAAGATGAGGAAGAGTTCAGGCTAGCAGATCTTACCCCAGGTCACACCGATACAAACAGATCCAAACAGACCTCTGGAGGCCAACTGGCGCCCCCCATCTCGCAAGAAGACCCCATGCCCCGCAGCCCATCTCTGCAAACCTCGCCTCAAACCCCATCTCAACCCGAAGCCCAGATCCTTGCTCAACCCCCATCACCGCTTCAGGATGAGGATCAGGAAAATCAGACTCCCATACCTCACCCGAGGACCAAACAGCACTGAACCAAGAGAAATCAAGAGCCGTACTGTTCACTGAATGATAGTATATGGGACTTTCCTAGAATGATTACAAGCATTTTGGTGGTAAGCATTTTACAACCTGTGCGCTATTACTCCTTCTGTAAGTCTTCTGAAGTCAATTTGTCCTGATTTACAATGTAAAATATTGACTTTTTTGTTTGAGATTAACTAAA
>TU468090
TTGGATTTCTGGATCATGGTGAGCATCCTAGCCGGCGGAGGAGCCCTTCTGCTGCTGCTAATATGTGTTCTCCTCATCTGTGTGTGTTGCAGGTGCAAAAAGCTCCAACAAGGCCAAGATAAGACAGAGTTCACGCTAGCAGATCTTACCCCAGGTCACACCGATACAAACACCAAAGCCCAGATCCATGCTCAACCCCCACCACCGCATCAGGACGAGGATGAGGAATATCCGACTCCCATACCTCACCCGAGGACCAAACAGCAGTGAACCAAGAGAAATCAAGAGCCGTACTGACCAATGGAATGAGACGCTTGAATGTTCACTGAATGATAGTATATGGGACTTTCCTAGAATGATTTTCATTGACTAAAAGCCATATCTTGATTGTAAGAGTGTCATTAAAGAAATAGTTTCCTAAAAATGAGAATTCGGTCATGTACTCTCCCT
>TU468097
TCAACATCAAAGTCATCAAAACTATGAAATGACACAAATGGAAGTCTGTGAATTATGTGGCGACCAAAAAAAGTTAAGATAAAATAAATAGGAGAAAATGCATCCTTTATGTTGACGTCAAAGGTTGTATTTCCATGAATGTTGCGCACTTGTTGGTGCTTTTACTTCACTATCCAATTCAAGTCATCCAGCAGTAGACGTTAAAATGAAATGTATGTTTACATTCTAAGCATTTAAATGGAAGTCTTCAAATCAAATTGTTTTGAAGGTAATTAAGAGCAAATTCAATGAAGTGTGTCTAAACATTTGACTCATGAAATAACATTGGATCATACAATATTACACATGATGCAGTTTGCAAGATTTTAAACAGCTTTTTTTTTAATGTTCCACTTGTCTGTTATTGATTTCATGACATCTGTTCCTGTCTTACAGGTGAAGGCCCAGGTCTTGGTAAACACTTTGGCTTGGATTTCTGGATCATGGTGAGCATCCTAGCCGGCGGAGGAGCCCTTCTGCTGCTGCTAATATGTGTTCTCCTCATCTGTGTGTGTTGCAGGTGCAAAAAGCTCCAACAAGGCCAAGATAAGACAGAGTTCACGCTAGCAGATCTTACCCCAGGTCACACCGATACAAACACCAAAGCCCAGATCCATGCTCAACCCCCACCACCGCATCAGGACGAGGATGAGGAATATCCGACTCCCATACCTCACCCGAGGACCAAACAGCAGTGAACCAAGAGAAATCAAGAGCCGTACTGACCAATGGAATGAGACGCTTGAATGTTCACTGAATGATAGTATATGGGACTTTCCTAGAATGATTTTCATTGACTAAAAGCCATATCTTGATTGTAAGAGTGTCATTAAAGAAATAGTTTCCTAAAAATGAGAATTCGGTCATGTACTCTCCCT
>TU468091
TTGGATTTCTGGATCATGGTGAGCATCCTAGCCGGCGGAGGAGCCCTTCTGCTGCTGCTAATATGTGTTCTCCTCATCTGTGTGTGTTGCAGGTGCAAAAAGCTCCAACAAGGCCAAGATAAGACAGAGTTCACGCTAGCAGATCTTACCCCAGGTCACACCGATACAAACACCAAAGCCCAGATCCATGCTCAACCCCCACCACCGCATCAGGACGAGGATGAGGAATATCCGACTCCCATACCTCACCCGAGGACCAAACAGCAGTGAACCAAGAGAAATCAAGAGCCGTACTGACCAATGGAATGAGACGCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04456420_04468754.mRNA False 2282 mRNA 0.39 10 4456229 4469450
TU468090 False 450 lncRNA 0.46 2 4464745 4466067
TU468097 False 917 lncRNA 0.39 2 4464745 4466534
TU468091 True 318 lncRNA 0.52 2 4464877 4466067

Neighbor

gene id symbol gene type direction distance location
CI01000299_04398464_04403711 NA coding downstream 52518 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 68209 4370401 ~ 4388020 (-)
CI01000299_04242809_04251680 ARGLU1 coding downstream 204364 4242197 ~ 4251865 (-)
CI01000299_04227918_04239792 EFNB2B coding downstream 216437 4227520 ~ 4239792 (-)
CI01000299_04186183_04196219 MX1, MXB, MXA coding downstream 258345 4184967 ~ 4197884 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding upstream 118344 4587794 ~ 4594120 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding upstream 133941 4603391 ~ 4609353 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 176189 4645639 ~ 4651938 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 189445 4658895 ~ 4669022 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 239053 4708503 ~ 4714088 (-)
G407406 NA non-coding downstream 549 4455446 ~ 4455680 (-)
G407359 NA non-coding downstream 42827 4410503 ~ 4413402 (-)
G407397 NA non-coding downstream 93991 4362007 ~ 4362238 (-)
G407387 NA non-coding downstream 106465 4349523 ~ 4349764 (-)
G407409 NA non-coding upstream 562 4470012 ~ 4470215 (-)
G407414 NA non-coding upstream 9539 4478989 ~ 4554077 (-)
G407416 NA non-coding upstream 11419 4480869 ~ 4481664 (-)
G407422 NA non-coding upstream 35260 4504710 ~ 4563664 (-)
G407429 NA non-coding upstream 39672 4509122 ~ 4514347 (-)
G405053 NA other downstream 2438179 2017687 ~ 2018050 (-)
G404976 NA other downstream 2575241 1855639 ~ 1880988 (-)
G404784 NA other downstream 2796229 1659655 ~ 1660000 (-)
G404372 NA other downstream 3380338 1070607 ~ 1075891 (-)
G407413 NA other upstream 6544 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 456518 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 971887 5427661 ~ 5443433 (-)
G407805 NA other upstream 1358386 5835889 ~ 5835989 (-)
G407408 NA non-coding upstream 284 4466818 ~ 4467020 (-)

Expression


Co-expression Network