CI01000299_04603421_04609353 (ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1)


Basic Information

Item Value
gene id CI01000299_04603421_04609353
gene name ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4603391 ~ 4609353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04603421_04609353.mRNA
ACGGGGAACGATGACTACAAATTGACAGCAACTTCTGAGGATGACATCAAAAAGGCCAAAAAGGTCAAAAGAAAGAAGAGGGATGTGAACGAACTGAAGAAAGAAGTGGAACTGGATGACCACAAGCTGACATTGGATGAACTTTCACGCAAATATGGCACTGACTTGAACAAGGGATTGTCGTCTTCACGTGCAAGGGAGATCTTAGAGCGTGATGGACCGAATGCATTGACCCCACCTCCTACGACTCCAGAATGGGTCAAGTTCTGCACACAGCTCTTTGGTGGCTTCCAAACACTGCTGTGGTTTGGTGCATTTCTTTGTTTCACGGCATATGGAATCCAGGCTGCATCTTCTGAAGAACCGGCAAATGACAATCTGTACCTGGGACTTGTGCTTGCCTTTGTTGTTATAGTCAATGGATGGTTCTCATACTATCAAGAATCCAAGAGCTCCAAGATCATGGAATCTTTTAGGAACCTTGTTCCTCAGCAAGCCCTGGTTGTGCGTGATGGAGAGAAAAAGATCATCAGTGCCGACGAGGTCGTTGTAGGTGATCTTGTGGAGGTCAAAGGTGGAGACCGAATCCCAGCTGATCTACGCATCATCTCTTCACAAGGATGCAAGGTGGACAACTCTTCCCTCACTGGAGAGTCTGAACCCCAGAGTCGCACTCCTGACTTCTCCCATGAAAACCCTCTGGAGACCAGAAACATTGCGTTTTTCTCTACTAACTGTGTTGAAGGTACTGCCAAAGGGATTGTCATCAGCACCGGTGACCATACCGTCATGGGTCGTATAGCATCACTTGCCTCCAGCCTGGATGGTGGAAAAACACCAATTGCTAGAGAGATTGAGCACTTCATCCACATCATCTCTGGTGTAGCTGTCTTCCTGGGCGTGTCCTTCCTAATCCTCTCCCTGATGCTTGGATATGGGTGGTTGGAAGCAGTTGTTTTCCTGATTGGAATCATTGTTGCTAATGTACCTGAAGGTCTTCCTGCCACTGTAACTGTGTGTCTAACTCTGACTGCCAAACGTATGGCAAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCACCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCAAATTCATGAAGCAGACACCACAGAGAACCAGAGTGGAACCGCATTTGACAAGAGCTCTGCTACTTGGGCTGCCCTCGCACGTGTCGCTGGTTTGTGCAACCGTGCTGTTTTCCGTGCTGAACAGAGCCATCTCCCAATCCTTAACCGAGAAACAGCTGGTGATGCCTCAGAGTCTGCCCTGCTGAAGTGTATTGAGCTGTGCTGTGGTTCAGTCACTGAAATGAGAGAGAAGTACACAAAGATTGCTGAAATCCCTTTCAACTCCACCAACAAATATCAGCTCTCAATCCACAAGAATCCCAATCCCTCAGAGTCTAAGCACCTGATGGTGATGAAGGGAGCGCCTGAGAGGATCTTGGATCGATGCTCCACCATTTTGATTCAAGGAAAAGAGCAGCCTTTGGATGATGAAATGAAAGATTCGTTCCAAAATGCTTATGTAGAACTCGGAGGTCTTGGAGAAAGAGTGCTGGGCTTCTGCCACTTTTCCCTCCCTGATGACCAGTTTCCTGAAGGTTTTGCATTTGATTCTGAAGATGTGAACTTCCCCACTGAGAACCTGTGTTTTGTTGGCCTCATGTCCATGATCGATCCTCCTCGTGCTGCTGTACCAGATGCAGTGGCCAAATGCCGGAGTGCTGGAATCAAGGTTATCATGGTTACTGGTGACCATCCAATTACAGCTAAAGCTATTGCAAAGGGTGTTGGTATCATCTCTGAAGGCAACGAGACTGTGGAAGACATTGCAGCTCGTTTGAATATCCCCGTTGGAGAAGTTAATCCAAGAGATGCTAAGGCCTGTGTGGTCCATGGAGGAGAACTGAAGAATATGAGTGAGAGTGACCTGGATGATATCCTGAAACATCATACAGAAATTGTGTTTGCCAGAACTTCTCCACAACAAAAGCTGATCATTGTGGAAGGTTGTCAGCGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCTCCTGCTCTGAAGAAGGCTGACATTGGTGTGGCTATGGGTATTGCTGGATCTGACGTATCCAAACAGGCTGCTGACATGATTCTTCTGGACGACAACTTTGCCTCAATTGTTACTGGAGTAGAAGAAGGACGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACGTTGACTAGTAAGATCCCTGAGATGTCACCCTTCCTCTTGTTTGTCCTTGTCGGTATTCCTCTACCTTTGGGCACCGTCACCATTCTCTGCATTGACCTGGGCACTGACCTGATTCCAGCAATCTCATTGGCATATGAAAATGCAGAAAACGACATCATGAAGAGACAACCCAGAAATGCTCAAACAGATAGGCTGGTGAACGTGAGGCTAATCAGTATGGCATATGGTCAAATCGGTATGATCCAAGCAGCTGCAGGGTTTTTTACCTACATTGTGGTTATGGGTGAGAATGGATTCTGGCCCAGTTATCTGCCAGGACTTCGAGTTGGCTGGGAAGACAGATCTATCACTGACCTGGAAGATAGCTATGGACAACAATGGACCTACGAGGCCAGAAAGATTATAGAGTCCACATGCCACACAGCATTCTTCATTAGTATTGTGGTTGTGCAGTGGGGTGACTTGATCATTGTAAAGACCAGAAGAAATTCCATTGTACAGCAAGGAATGAAAAACAAAGTCCTCATCTTTGCTTTTTTTGAGGAAGGTGCCATGGCAGCTTTCTTGTCCTACTGCCCAGGCATGGACGTTGCTGTCAGAATGTATCCTTTAAGACCATTGTGGTGGTTCACTGCCTTCCCATATTCACTACTCATCTTCATCTATGATGAAATTAGAAAATACATCCTACGGCAGAATCCAGGAGGTAATAACGGATTTTTCCTACACATGTTTGCAGACTTCATTATCCTCAATAAAGTTTGTTGTATTTCATTACTTAGAGAGATTGAGAATGAGTTGGCTCTAATATCTGTGCTATTGTGTTTCAGGCTGGGTGGAACAAGAAACATACTACTGAAACAAGACGACGTTCTATTGCAAACTCATGTTAGGAGACATTTTTGGATATGCTCAAAATGATACAGAATCTGGTCGATTTCAGCAAATAAA

Function

symbol description
atp1a1a.3 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell; neuromast support cell; and pronephric duct. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.2 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within semicircular canal morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; integument; intermediate mesoderm; nervous system; and yolk. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1 Enables P-type sodium:potassium-exchanging transporter activity; chaperone binding activity; and steroid hormone binding activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; cellular response to steroid hormone stimulus; and ion transmembrane transport. Located in several cellular components, including T-tubule; apical plasma membrane; and lateral plasma membrane. Part of sodium:potassium-exchanging ATPase complex. Implicated in Charcot-Marie-Tooth disease type 2DD.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04603421_04609353.mRNA True 3279 mRNA 0.46 20 4603391 4609353

Neighbor

gene id symbol gene type direction distance location
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding downstream 9271 4587794 ~ 4594120 (-)
CI01000299_04456420_04468754 NA coding downstream 133941 4456229 ~ 4469450 (-)
CI01000299_04398464_04403711 NA coding downstream 199680 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 215371 4370401 ~ 4388020 (-)
CI01000299_04242809_04251680 ARGLU1 coding downstream 351526 4242197 ~ 4251865 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 36286 4645639 ~ 4651938 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 49542 4658895 ~ 4669022 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 99150 4708503 ~ 4714088 (-)
CI01000299_04741460_04746667 NA coding upstream 132094 4741447 ~ 4746667 (-)
CI01000299_04861862_04862244 NA coding upstream 252224 4861577 ~ 4862593 (-)
G407420 NA non-coding downstream 17343 4571131 ~ 4586048 (-)
G407422 NA non-coding downstream 39727 4504710 ~ 4563664 (-)
G407434 NA non-coding downstream 55585 4523411 ~ 4547806 (-)
G407429 NA non-coding downstream 89044 4509122 ~ 4514347 (-)
G407416 NA non-coding downstream 121727 4480869 ~ 4481664 (-)
G407467 NA non-coding upstream 27257 4636610 ~ 4637425 (-)
G407476 NA non-coding upstream 67757 4677110 ~ 4677446 (-)
G407477 NA non-coding upstream 68665 4678018 ~ 4678228 (-)
G407475 NA non-coding upstream 94771 4704124 ~ 4704801 (-)
G407526 NA non-coding upstream 212688 4822041 ~ 4823551 (-)
G407413 NA other downstream 52670 4475994 ~ 4550721 (-)
G405053 NA other downstream 2585341 2017687 ~ 2018050 (-)
G404976 NA other downstream 2722403 1855639 ~ 1880988 (-)
G404784 NA other downstream 2943391 1659655 ~ 1660000 (-)
CI01000299_04913779_04927715 NA other upstream 316615 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 831984 5427661 ~ 5443433 (-)
G407805 NA other upstream 1218483 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1922648 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location