CI01000299_04645836_04651938 (ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1)


Basic Information

Item Value
gene id CI01000299_04645836_04651938
gene name ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4645639 ~ 4651938 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04645836_04651938.mRNA
GAAGGTCGAGAACAATATGAGCTGGCGGCCACCTCTGAGCAGGGGGGCAAGAAGCCAAAACCTAAGGGCAAGAAAGAGAAGGATAAAGACATGGATGAACTCAAAAAAGAGGTGGACTTGGATGATCACAAACTGACCCTGGATGAACTTAATAGGAAATATGGCACTGATTTAACCAGGGGATTGTCAGCCACACGTGCTAAGGAGATCTTGGAACGTGATGGGCCCAATGCTTTGACTCCACCTCCAACAACCCCAGAATGGGTCAAGTTCTGCAAGCAGCTCTTTGGAGGATTCTCAACTCTCCTGTGGATTGGAGCCATCCTTTGTTTTCTTGCCTACGGCATCCAGGCGGCCTCCGAGGAGGAACCTGCCAATGATAACTTGTATCTGGGTATTGTGCTCTCTGCTGTTGTGATGATCACTGGATGTTTCTCATACTATCAAGAGGCCAAGAGCTCCAAAATCATGGACTCTTTCAAGAACCTTGTCCCTCAGCAAGCCTTGGTTATCCGTGATGGTGAGAAGAAGAATATCAATGCTGAAGAAGTTGTGATTGGAGATCTTGTGGAAGTCAAAGGTGGTGACAGAATTCCTGCTGATCTGCGCATCATTTCTGCTCATGGATGCAAAGTGGACAACTCCTCCCTCACTGGTGAATCTGAGCCCCAGAGTCGTACTCCTGACTTCTCCAATGAAAACCCACTTGAGACCAGGAACATTGCGTTCTTCTCTACCAACTGTGTTGAAGGTACTGCCAGAGGTGTCGTCATCAACACTGGTGACCGCACTGTCATGGGTCGTATCGCCACTCTTGCTTCTGGTCTTGAAGTTGGTCGCACTCCGATCTCAATAGAGATTGAGCACTTCATCCACATCATCACTGGTGTAGCTGTCTTCCTGGGCGTGTCCTTCTTTATCCTCTCTCTGATCCTTGGATACTCTTGGCTGGAAGCTGTCATCTTCCTTATTGGTATCATTGTCGCTAATGTGCCAGAGGGTCTATTGGCTACAGTAACTGTGTGTCTAACTCTGACTGCCAAACGAATGGCAAAGAAGAACTGCTTGGTGAAGAATCTGGAAGCCGTAGAGACTCTTGGCTCGACCTCCACCATCTGCTCTGACAAGACTGGAACTTTAACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCAGACACCACAGAGAACCAGAGTGGAACCTCATTTGACAGGAGCTCTGCTACTTGGGCTGCCCTCGCACGTGTCGCCGGTCTGTGCAACCGTGCCGTCTTCCTTGCTGAGCAAGAAAATATCCCAATTCTTAAGAGAGACGTGGCTGGTGACGCCTCTGAATCTGCCCTGCTGAAGTGTATCGAGCTCTGCTGTGGATCAGTGAAAGAGATGAGAGAAAAATACAACAAGATTGCTGAGATCCCATTCAACTCTACCAACAAATACCAGCTCTCCATCCATAAGAACATCAATACCAATAAAACTGAAACCAATCACCTGCTGGTAATGAAAGGTGCTCCTGAGAGGATCCTGGACAGGTGCACCTCTATTTTGATCCAAGGAAAAGAGCAGCCACTTGATGATGAGATGAGGGACGCCTTCCAGAATGCATACTTGGAACTTGGTGGCCTTGGAGAAAGAGTACTAGGATTCTGCCACTTCAACCTTCCTGACGAACAGTTTCCCGAGGACTTCCAGTTCGATACAGAGGAGGTGAACTTCCCCACTGAGAACCTGTGCTTCATTGGCCTTATGTCCATGATTGATCCTCCTCGTGCTGCTGTACCAGATGCTGTGGGCAAATGTAGGAGTGCTGGAATAAAGGTTATCATGGTTACTGGTGATCATCCAATCACAGCCAAGGCCATTGCCAAGGGAGTGGGTATCATTTCCGAGGGCAACGAGACCGTTGAAGACATTGCTGCTCGCTTGAACATTCCTATTAATGAGGTCAACCCAAGGGATGCCAAGGCTTGTGTGATCCATGGAGGTGACCTGAAGGATCTGACCCCTGAGCAATTAGATGACATCTTGAAGTACCACACAGAAATTGTGTTTGCCAGAACATCTCCTCAACAGAAGCTGATTATCGTTGAAGGCTGTCAGAGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCCCCTGCTCTGAAGAAGGCTGACATTGGTGTGGCTATGGGTATTGCTGGATCTGATGTTTCTAAACAGGCTGCTGACATGATTCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACCCTGACCAGTAACATCCCTGAGATCACCCCCTTCCTCTTCTTCATCATTGCCAACATCCCTCTTCCTTTGGGTACAGTCACCATTCTCTGCATTGACCTGGGAACGGACATGGTTCCTGCCATTTCATTGGCCTATGAAGCTGCTGAGAGTGACATCATGAAGCGTCAACCCAGAAACCCCAAGACTGACAAACTTGTAAATGAGAGACTCATTAGCATAGCCTACGGTCAGATTGGTATGATTCAAGCTCTGGCCGGGTTCTTCACATATTTTGTCATCTTGGCTGAAAACGGCTTCCTTCCATCGTCATTGCTGGGCATTCGAGTGCTCTGGGATGACAAATACATCAACGACCTGGAGGACAGTTATGGCCAGCAATGGACATACGAGCAGAGGAAGATTGTAGAGTTCACATGCCACACGGCCTTCTTCACCAGTATTGTAATAGTACAGTGGGCTGATTTGATCATCTGCAAGACCAGAAGAAACTCAGTCTTCCAGCAAGGAATGAAGAATAAGATTCTCATCTTTGGACTGTTTGAAGAAACAGCTCTTGCAGCTTTTCTGTCCTACTGCCCAGGCATGGATGTTGCCCTCAGAATGTACCCATTGAAACCAAACTGGTGGTTCTGCGCCTTCCCCTACTCACTCCTCATCTTTATTTATGATGAAATTCGAAAACTTATCATCCGACGCAGCCCAGGAGGTTGGGTGGAGAGGGAGACCTACTATTAAAGCATCCAGTCTGCATCACACAAGTTTATTTGCATGGTTGTCTCGCTGCTCGGAATTTTAACCTCCGTAATTTGGATGTTTTTATATAGGGAATGCTTGATACAAACACTGAGATCGTGAACCAAGACATTGCGTGCCTTGTTTCCGAAGCCGGACCAATTTTATACATGTTTTTAAAAGTGTAATATAAAAATAAA

Function

symbol description
atp1a1a.1 Enables P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within several processes, including animal organ development; embryonic body morphogenesis; and regulation of heart rate. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1b Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and neural tube. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1 Enables P-type sodium:potassium-exchanging transporter activity; chaperone binding activity; and steroid hormone binding activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; cellular response to steroid hormone stimulus; and ion transmembrane transport. Located in several cellular components, including T-tubule; apical plasma membrane; and lateral plasma membrane. Part of sodium:potassium-exchanging ATPase complex. Implicated in Charcot-Marie-Tooth disease type 2DD.

GO:

id name namespace
GO:0060974 cell migration involved in heart formation biological_process

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04645836_04651938.mRNA True 3272 mRNA 0.47 21 4645639 4651938

Neighbor

gene id symbol gene type direction distance location
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding downstream 36286 4603391 ~ 4609353 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding downstream 51519 4587794 ~ 4594120 (-)
CI01000299_04456420_04468754 NA coding downstream 176189 4456229 ~ 4469450 (-)
CI01000299_04398464_04403711 NA coding downstream 241928 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 257619 4370401 ~ 4388020 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 6957 4658895 ~ 4669022 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 56565 4708503 ~ 4714088 (-)
CI01000299_04741460_04746667 NA coding upstream 89509 4741447 ~ 4746667 (-)
CI01000299_04861862_04862244 NA coding upstream 209639 4861577 ~ 4862593 (-)
CI01000299_04913779_04927715 NA coding upstream 261435 4913373 ~ 4927715 (-)
G407467 NA non-coding downstream 8214 4636610 ~ 4637425 (-)
G407420 NA non-coding downstream 59591 4571131 ~ 4586048 (-)
G407422 NA non-coding downstream 81975 4504710 ~ 4563664 (-)
G407434 NA non-coding downstream 97833 4523411 ~ 4547806 (-)
G407429 NA non-coding downstream 131292 4509122 ~ 4514347 (-)
G407476 NA non-coding upstream 25172 4677110 ~ 4677446 (-)
G407477 NA non-coding upstream 26080 4678018 ~ 4678228 (-)
G407475 NA non-coding upstream 52186 4704124 ~ 4704801 (-)
G407526 NA non-coding upstream 170103 4822041 ~ 4823551 (-)
G407562 NA non-coding upstream 287753 4939691 ~ 4939939 (-)
G407413 NA other downstream 94918 4475994 ~ 4550721 (-)
G405053 NA other downstream 2627589 2017687 ~ 2018050 (-)
G404976 NA other downstream 2764651 1855639 ~ 1880988 (-)
G404784 NA other downstream 2985639 1659655 ~ 1660000 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 789399 5427661 ~ 5443433 (-)
G407805 NA other upstream 1175898 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1880063 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014556 LOC107569141 coding CM030128.1 CM030128.1 17484850 ~ 17500956 (-)