CI01000299_05739937_05770480 (MRPL39)


Basic Information

Item Value
gene id CI01000299_05739937_05770480
gene name MRPL39
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5739808 ~ 5770807 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05739937_05770480.mRNA
CCTTTAAAGTTGTTTGACACTCAAGAGTGTATAATTGACCTGTTCTTCTAACAGTTATAATAATAAATACTTAATAATAAATTGCAAATTATAATAAAACATGACTGTAACTATTTTGGAGCTTGTTGAAAGCAGTCACCCAAAGCGGAACCCTAAACGCCTGTTCCTTCACCTCGCACGGAATGTTATTATCGCTGCAGCGCTCCAGCCGGAAACCGTACAAGCATGTCGCTGATTTCAGTCAGTTAGCAGGATTATTGAATACCTTTTCTCTATATTTTGTATTTATCAGTTTATATTGCGGAGGAAATCTCTGTGTGACCGCTCATGGCTGCTCGGACAGTCTGTCAGATGCTTCAGCGCCGTCTGGCGTCAAGCGCAGCGGCTGCACGTCTGTCGTCTGCAGAACTGCGCAGTCATCGCAGCGCCTTGTTCTCTAAAGAGCAAGAGCGTCAGAGATCTCTGTTTCCGCGCACAGAGAAGATCGAGGTGACCCTACGGGGGCCCGGCCTACAGGGGACCCTGCTGGTCATGAACCGAGGCGTGTCGACGCCACACAGCTGCACGCGCCATCTGACGGAGTGGCATGTTAAGAGTTCTGCTCTGGCTCTGGTTGACGGGCAGCCGTGGCACATGCACCAACCTTTGACCCGCTCCTGTGACCTCACCCTCCTCACCTTTAAAGATGAAGACCCTCAGATAGTCAATCAGGCGTACTGGCGCTCCTGTGCGGCTCTTCTGGGTCATGTGCTCGACGGAGCGTTTAAGGACGAGTTCAGCGTCGAGCTGCTGAAGATTCCAGAAGTACCAGTGACCGCCGGTGCATTCTGTTGTGATCTGGTTCTGGACTCTCGTTTAGACTCCTGGACGCCCACAGAGGAGAGCCTGCGCAGTTTCACCCGTGACGCGCTGCAGCTCGTCCATAAAGATCTGCCGTGGGAACCGCTGGACGTTTCGCCGTCTGTGGCGCTGGAGATCTTCTCTCACAGCAGGTGTAAACAGGAGGAAGTTGAAGAGAGAGCAGCTCAAAGTCAGAATAGGACGGTGTCGTTATACAGGTGTGGCGATCATGTGACGCTGAGCGGAGGCCCTCTAGTGTCCCGCACGGGTCTGTGCTCGCAGTATGAGGTCACGTCCATCCATACGGTGGGAGAGAGCGCATTGGGCGTCCGGCGCAGGGCTCAGGGTCTCTCGCTGCCAGTGAATCTGACCGTACGCGTCCCTGTCGTCCCCGTCACCGTCACCAGCCGCAGTCCCAAAGTGGAAGTGCATGAGCTCTCGGACGCCGAGCTCTCCTGTGAGTTCAAGACTGAGAAAGAAACCAGTCCTCGCATCGAGTGGAAGAAGAAAGACAAAGACGTGTCCTTCGTTTATTATGAAGGCAGCTTCTTAGGACCGTTTAAGGGGCGCGCGACTATCGAAGGGGCGACGGTGCATCTGCGCAGAGTGACTCAGGCGGATGCGGGCGAGTACCGCTGTGAGGTCAGCGCTCCGGCCGACTCCGTCAAGCTGGGAGAGACCAACGTCACGCTCAAAGTGCTGGTTCCTCCACAAACCCCGTCATGTGACATTCCCAGCTCCGCTCTGACGGGCTCTCAGGTGGAGCTGCGCTGTAGGGACCAGCACAGCATCCCGCCGGCCAGATACACCTGGTTCAAAGACAACCGCGCGCTGCCCATCCGTCAGCCCAACGCCACATACACGGTCAACGAGTTCACTGGTGTACTGACCTTCCAGACGGTGAGCAGGGCCGATACGGGTCAGTATCACTGTGAGGCCAAAAACGGGGTGGGACCCGCTAAGAGCTGCCGGGGGACACTCATGCAGATCGAGTTTAACATTGTGTTTTCCTGTTTCAGTCAGCATTCAGGATACAGTCACCCTCCAAAGGAACGCCTCCTGCTGGCCGTTTGTGGTGCAGCAGACCCTCAAACCAATGAACCAAATGAACCAGAGCGACTGAAACAGTTTAATCCGGTGCCTTTAAACAAGCTGATCGATGATGTTTGACACGCCGTGCCTTTCATTTCAACAGAATCATGTCTTTATCTGATGAGTGTGAGGATGTAAATCATGCAATGGGTGAATTGTTGTATATTTTATCAGTATTTGTTTATTCTTGTTTTGTTTTTTAATAAA

Function

symbol description
mrpl39 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

GO:

id name namespace
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG:

id description
K17420 MRPL39; large subunit ribosomal protein L39

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05739937_05770480.mRNA True 2139 mRNA 0.53 15 5739808 5770807

Neighbor

gene id symbol gene type direction distance location
CI01000299_05602070_05604608 NA coding downstream 135193 5601983 ~ 5604615 (-)
CI01000299_05512316_05521322 NA coding downstream 218486 5512051 ~ 5521322 (-)
CI01000299_05478688_05502027 ADAMTS5 coding downstream 236540 5477482 ~ 5503268 (-)
CI01000299_05466693_05471714 ADAMTS1 coding downstream 267821 5465642 ~ 5471987 (-)
CI01000299_05457285_05462908 NA coding downstream 276317 5456864 ~ 5463491 (-)
CI01000299_05802706_05815472 MRPL16 coding upstream 31697 5802504 ~ 5815472 (-)
CI01000299_05818562_05822413 NA coding upstream 47599 5818406 ~ 5823867 (-)
CI01000299_05826769_05831144 NA coding upstream 55159 5825966 ~ 5831312 (-)
CI01000299_05831615_05835696 NA coding upstream 60584 5831391 ~ 5835808 (-)
CI01000299_05849494_05852270 NA coding upstream 78595 5849402 ~ 5852506 (-)
G407764 NA non-coding downstream 99942 5634840 ~ 5639866 (-)
G407734 NA non-coding downstream 184963 5552628 ~ 5554845 (-)
G407669 NA non-coding downstream 321437 5413334 ~ 5418371 (-)
G407591 NA non-coding downstream 557446 5085394 ~ 5182362 (-)
G407848 NA non-coding upstream 3442 5774249 ~ 5775541 (-)
CI01000299_05896205_05898855 NA non-coding upstream 50768 5896043 ~ 5898857 (-)
G407858 NA non-coding upstream 158832 5929639 ~ 5930546 (-)
G407827 NA non-coding upstream 174568 5945375 ~ 5946025 (-)
G407825 NA non-coding upstream 192873 5963680 ~ 5969556 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 283700 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 810990 4913373 ~ 4927715 (-)
G407413 NA other downstream 1189087 4475994 ~ 4550721 (-)
G405053 NA other downstream 3721758 2017687 ~ 2018050 (-)
G407805 NA other upstream 57029 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 761194 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location