CI01000299_05802706_05815472 (MRPL16)


Basic Information

Item Value
gene id CI01000299_05802706_05815472
gene name MRPL16
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5802504 ~ 5815472 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05802706_05815472.mRNA
ATGTTCCCAGCACTAAAGAACGTGTTTTTGGGCTTTGTCCGGACATCAAGCCTGCCAGATGTCCTGCAGAACAACATGAAGGTCCTGTCGGCGGGACTGAGGACTTATGAAGTTCCACCAGACTTCAGCGACGTGGTTCTTCCAGAGAAGCCGAAACTGAAATTCCTGGAAAAGGTCCCGAATTTGAAACAAGCAAAGAAGGAGATGAAGAAGCTGCGTGACATCCAGGGACCGGCCAAAAGCGGCAATACCTTCACCAAAGGACAGTACGGCATTGTGGCTCTGGGTGGAGGATACTTGCACTGGGGTCACATGGAGATGATGCGGCTCACCATCAACCGCCGCATTGATCCCAGCACCACGTTTGCCCTGTGGCGCTTCAGTGCCCCTCACAAACCCATCACCCGTAAAGGACTGGGTCAACGCATGGGCGGCGGAAAAGGTGCCATCGACCACTACGTCACTCCAGTGAAATGCGGCCGGCTGGTAGTAGAGGTCGGAGGTCGCGTCGAGCTGGGTGAGGTGGAGGCGGTGCTCACAGAAGTGGCCAAGAAGCTGCCCTTTCCAGCCAAGGTGGTGAGCAGGGAGAGTCTGGCGGCGCTGCATCAGGAACAGGCCGAACGCGAGACCAACAACCAAAACCCCTGGACCTTCCAGAGGGTCGCGCGGGCCAACATGCTGGGCATTCGCAAAGTCCTGAGCCCGTTCGACATTCACAATCACGGACGCTACGCTGGGAAGTTTTACTACCCTAAAAGGCTTTTCATGATGAAACCAGCCCGAGGATCAGGAAGGGCATCCACACAGGGCCCCAAAGGAGCCGCAGAGAGGAAGATGCACAAACCTCAAAAGTCCAAGCCCACTGCTGAGGGCCCACATCTGGAGCCATCTAAGAAAAACTGCATTAAAACCTCAACAAAGGCTAAAAAGAGTAAGAATCAGGGAAATTGGAAGCCACTGACCAAGTCTTCCTTACTGGCTCTGGAGAACATGCTTAGTTTGTCGATTCTATCTGTTCTGGCATTGAAAAACAAAGAAAAAGAAGAATCACAGATGCATCTCAACCGCCTTAAAGATCGAAAACATGGAGACATTATGCGTGTGTCCCATCAGTTCAAAGCTGAGAGTAAGAAGTCCGAACACGGCAAGAAGACGCTTGAGTCTCTAGAGGAGAACATGGGCTCGATTGTTAGCACTCTTGAGGAGATGGAGGTGAAGACAGATCATTTGGAGGAGAAATGCAGGATGATGAGAAGCAAACTAGACGATGAAGAGGAAAAGGCACAGGAGTTTCTCCAACTGTCAGAACAGACGGTCCTGCGTCTTCCTGCTGTACCGTCTCGCCCTGCCAATGAGCCGACGCTACAGGAGCACCTGATGAAGATCGTCCCCAATCCTCCCGCAGTGGTCAGAGCACTTCAGACGGCTCCGGCACTCGGGGATGTGAGGGCCTTTCTGGAGCTCGCACATAAACAGGTGGATTCAGTACAAGCCGCTCATAGAGACACAGCCCTGGACTGACCTTCACAGAAGGAGACCGTTTAAGTTTACACAGACACAAACAGCTGATAAACAAAATAACTGCTTATTTATTTCAAAAATGAAAGAACTAGACACCGAAATTACATGCATCTCAAGCATTAATGCAACAATATCAACAATCAATGAATCAATTCAATTCAATTCAGAAGATTTAGCTTTCTCGCCTCTATCAGATAATATA

Function

symbol description
mrpl16 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL16 (mitochondrial ribosomal protein L16).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05802706_05815472.mRNA True 1723 mRNA 0.50 14 5802504 5815472

Neighbor

gene id symbol gene type direction distance location
CI01000299_05739937_05770480 MRPL39 coding downstream 31697 5739808 ~ 5770807 (-)
CI01000299_05602070_05604608 NA coding downstream 197889 5601983 ~ 5604615 (-)
CI01000299_05512316_05521322 NA coding downstream 281182 5512051 ~ 5521322 (-)
CI01000299_05478688_05502027 ADAMTS5 coding downstream 299236 5477482 ~ 5503268 (-)
CI01000299_05466693_05471714 ADAMTS1 coding downstream 330517 5465642 ~ 5471987 (-)
CI01000299_05818562_05822413 NA coding upstream 2934 5818406 ~ 5823867 (-)
CI01000299_05826769_05831144 NA coding upstream 10494 5825966 ~ 5831312 (-)
CI01000299_05831615_05835696 NA coding upstream 15919 5831391 ~ 5835808 (-)
CI01000299_05849494_05852270 NA coding upstream 33930 5849402 ~ 5852506 (-)
CI01000299_05856747_05860959 NA coding upstream 41244 5856716 ~ 5862986 (-)
G407848 NA non-coding downstream 26963 5774249 ~ 5775541 (-)
G407764 NA non-coding downstream 162638 5634840 ~ 5639866 (-)
G407734 NA non-coding downstream 247659 5552628 ~ 5554845 (-)
CI01000299_05457285_05462908 NA non-coding downstream 339332 5456864 ~ 5463491 (-)
G407669 NA non-coding downstream 384133 5413334 ~ 5418371 (-)
CI01000299_05896205_05898855 NA non-coding upstream 6103 5896043 ~ 5898857 (-)
G407858 NA non-coding upstream 114167 5929639 ~ 5930546 (-)
G407827 NA non-coding upstream 129903 5945375 ~ 5946025 (-)
G407825 NA non-coding upstream 148208 5963680 ~ 5969556 (-)
G407881 NA non-coding upstream 203070 6018542 ~ 6023664 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 346396 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 873686 4913373 ~ 4927715 (-)
G407413 NA other downstream 1251783 4475994 ~ 4550721 (-)
G405053 NA other downstream 3784454 2017687 ~ 2018050 (-)
G407805 NA other upstream 12364 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 716529 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location