G407408


Basic Information

Item Value
gene id G407408
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4466818 ~ 4467020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468098
GAACAGACCTGAACTTAAATATTGATGTAAAACATTAAGATGTCCAGCTCTGGCACTTTTCACAATTTCACTTTTGTTTCATAAAGTATGTGCTCTGGTTTTTGGTCTGGCTGTTTCCTGTTTTTGCTGCTGATGTACAATTGTGAATTTTTGACAGTAAAACAACCGTATTTTTTTAAAAGTGTACATTGACTCTGCAAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468098 True 203 lncRNA 0.33 1 4466818 4467020

Neighbor

gene id symbol gene type direction distance location
CI01000299_04398464_04403711 NA coding downstream 63107 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 78798 4370401 ~ 4388020 (-)
CI01000299_04242809_04251680 ARGLU1 coding downstream 214953 4242197 ~ 4251865 (-)
CI01000299_04227918_04239792 EFNB2B coding downstream 227026 4227520 ~ 4239792 (-)
CI01000299_04186183_04196219 MX1, MXB, MXA coding downstream 268934 4184967 ~ 4197884 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding upstream 120774 4587794 ~ 4594120 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding upstream 136371 4603391 ~ 4609353 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 178619 4645639 ~ 4651938 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 191875 4658895 ~ 4669022 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 241483 4708503 ~ 4714088 (-)
CI01000299_04456420_04468754 NA non-coding downstream 284 4456229 ~ 4469450 (-)
G407406 NA non-coding downstream 11138 4455446 ~ 4455680 (-)
G407359 NA non-coding downstream 53416 4410503 ~ 4413402 (-)
G407397 NA non-coding downstream 104580 4362007 ~ 4362238 (-)
G407409 NA non-coding upstream 2992 4470012 ~ 4470215 (-)
G407414 NA non-coding upstream 11969 4478989 ~ 4554077 (-)
G407416 NA non-coding upstream 13849 4480869 ~ 4481664 (-)
G407422 NA non-coding upstream 37690 4504710 ~ 4563664 (-)
G407429 NA non-coding upstream 42102 4509122 ~ 4514347 (-)
G405053 NA other downstream 2448768 2017687 ~ 2018050 (-)
G404976 NA other downstream 2585830 1855639 ~ 1880988 (-)
G404784 NA other downstream 2806818 1659655 ~ 1660000 (-)
G404372 NA other downstream 3390927 1070607 ~ 1075891 (-)
G407413 NA other upstream 8974 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 458948 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 974317 5427661 ~ 5443433 (-)
G407805 NA other upstream 1360816 5835889 ~ 5835989 (-)

Expression


Co-expression Network