CI01180000_01942458_01949580


Basic Information

Item Value
gene id CI01180000_01942458_01949580
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1942127 ~ 1950647 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_01942458_01949580.mRNA
TGTATAAATGTAGCTTAGTAAGATATAATTGGTATTGTGACTTTTCATTGACAGTTAAGCACATTTTCCCTTAATGATCATAGGTTTCATGACACTCACTGTACAGTTTTTATAATAAAGAATAAGTAGATGTGTTCAAGCTTTGGACTGGAACTGTATATCAGGTTGGTTTCATTTTAAAAGAGTGATTTCATGAGTGCTTTAAATAAATGGATGCACAAAGGTAGCAGCACGCCATTGTTCATCTCTCTCAATATATGTTGTGTGAACATGTGCGCTCACATATGCGCGTGCCAGTGGCCCTCAGGGAAACGCTTGTGAACAAGTGGAAAATGACAGGTTCCTCTCCACTGATCACAGACCCACGAGTCTCTGTGAGGTCATCTGAAAAACGCCCTGGCATAGAAGCACAGCATGATGGGAGGAATGCAGAGGAAAGAGTGCCAAGGCGCTCTTTGATTGCTGTCCGCCTGCCGGCACGGGATGCGTTGGAGGTCCTGGCAGAGAACATGGAGTTCAGCGGGAACCAAGGGCCATGTCTGGCGTTTCGGAGGGCCGCATCAGTGCTCAAGAGTCTCCCTGCTGCCCTACAATGCCTGGAGGAGATGCACCGTCTGCCCTGTCTGGGAGAACACAGCAAGGCCATCGTGGAGGATATCTTTGAATGCGGATCATCCTCCAGAGTTGAAGAGATACTGAATGACGAGAAGTATCGAACTATGAAGTTATTCAGCAGTGTGTTCGGGGTTGGACCCAAAACCGCAGAGAGCTGGTACTATAGAGGACTCCGGACGTTTGAACAGGTTCTGACTGAACCCAGCATCAGACTGAACCGCATGCAGACCGCAGGCCTCGTAATTTTCCGCCGCTGTTACTGCTGTCTTCAGGCGCTCATTTACGACCTGCTGATCTATAAACAACACGCCGGCTTCAAACAATTATGCAGATTTCGTTTGGGAGATTTCCAGTCGGGGTTCTTGTTCTATGAGGACATCAGTAAGCCGGTGAGCAGGACAGAGGCCAGCGCACTGAAGATTATAGTGGAGGAAGCTGTTATCTGTGTCAACCCGCACGCCACTGTCAACGTTGCAGGAGGATTCCGCAGGTAAACCCTGGTTCTTTTGACGAAAAGTCAATATTAGTGGTTTGTGCCTGTTTATGTCAGTTCAGTGGTGTGTGATTGTGTTTATTTTTATGAAACAACATTTTTGTCATGACAACTCTCAGAGTGTTTGGCATGGTAATGGATAGGACAATGTTAATATGCTTAGTCTTGGCGGAATAAATCTGCTATGCTGCTGTTGTTGCTGCTGTAGTTATTGCTGCTGCTGTAGTTATTGCTGCTGCTGCTGCTGTTATTGCTGCTGCTGTAGTTATTGCTGCTCCTGCTGTTATTGCTGCTGCTGCTGTTGGTCATGGCTGCTGCTGCTGTTGGTTATGGCTGCTGCTGCTGTTATTGCTGCTGCTGTTATTTCTGCTCCTGCTGTTTTTGCTGCTGCTGTTGGTTATTGCTGCTGCTGCTGTTATTGCTTCTCCTGCTGTTTTTGCTGCTGCTGTTATTTCTGCTCCTGCTGTTTTTGCTGCTGCTGTTGGTTATTGCTGCTGCAGATCTATACAGGTGGAGCTGGGGAAGGTGGAGGGTTTCTGAAAGCGCGCTGCAACTGTTACAGCAAAAGTTGACAGAGTATTTGAAGGTTGAGCAGTGGCTACTGATAGAGCAGGAATCAATCAGCTGTGCCCTATAGAGAATGATGTGATTGTGAGCAGGTTGAGTTAAGGACCTAGCAGTCTGCGCCATCTAGAGTTTCATGACAGAACTTTGTATTTCCCAAAGGAAAATGTATTGCTCAGACGTTGCCCTTTAATAAGCTCAGGTGATGCAATGTGGTTGTGTTTAAGATTATGAAATATCCCAAAAATCCCTTAAATTTACACTGCTGGAGTGTTCTGAGTCTGGCTCTCTGTATCTCTGTCATGCAAGGCAACTGCTTAGCAACTATTCAGAACAGCTTAGCAACTGCCTAGTAACCACCTATTGCACATATGGCCTAAATAACATTCAAACCTCAAGATACTTAAAACTTTCAGAATAATCAAGCCCTCATTCAAACTTTGTCTCTTCAATCTGTCTGCGAGCTGCACGCTTGTGGATTAATACCACAGGATTCCCTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_01942458_01949580.mRNA True 2175 mRNA 0.46 6 1942127 1950647

Neighbor

gene id symbol gene type direction distance location
CI01180000_01915282_01926129 NA coding upstream 15858 1914892 ~ 1926269 (+)
CI01180000_01865632_01870994 NA coding upstream 71038 1865509 ~ 1871089 (+)
CI01180000_01832263_01834405 COX5B.2, COX5B2, COX5B coding upstream 107128 1832013 ~ 1834999 (+)
CI01180000_01828938_01830221 DNAJC12 coding upstream 111313 1828938 ~ 1830814 (+)
CI01180000_01747067_01755038 GPR137B coding upstream 186870 1747067 ~ 1755257 (+)
CI01180000_02158036_02158965 HS3ST1L1 coding downstream 206703 2157350 ~ 2159222 (+)
CI01180000_02322594_02323609 NA coding downstream 369705 2320352 ~ 2323752 (+)
CI01180000_02362001_02362428 NA coding downstream 411313 2361960 ~ 2363530 (+)
CI01180000_02541296_02567509 CFAP46 coding downstream 590649 2541296 ~ 2567783 (+)
CI01180000_02574027_02588521 NA coding downstream 623380 2574027 ~ 2588824 (+)
G679080 NA non-coding upstream 132987 1808882 ~ 1809140 (+)
G679077 NA non-coding upstream 134072 1803405 ~ 1808055 (+)
G679072 NA non-coding upstream 162429 1778590 ~ 1779698 (+)
G679052 NA non-coding upstream 165002 1776710 ~ 1777125 (+)
G679069 NA non-coding upstream 176589 1765310 ~ 1765538 (+)
G679160 NA non-coding downstream 80091 2030738 ~ 2031031 (+)
G679165 NA non-coding downstream 100880 2051527 ~ 2061011 (+)
G679202 NA non-coding downstream 147894 2098541 ~ 2098808 (+)
G679204 NA non-coding downstream 149051 2099698 ~ 2106093 (+)
G679050 NA non-coding downstream 170622 2121269 ~ 2127987 (+)
G679076 NA other upstream 142694 1795170 ~ 1799433 (+)
G678946 NA other upstream 385976 1518353 ~ 1612547 (+)
G678637 NA other upstream 786455 1149551 ~ 1155672 (+)
G678751 NA other upstream 876036 1059843 ~ 1066091 (+)
G678440 NA other upstream 1790475 147934 ~ 151652 (+)
G679324 NA other downstream 438220 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 739115 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1602630 3569165 ~ 3573135 (+)
G680736 NA other downstream 1815044 3765691 ~ 3784441 (+)
G681137 NA other downstream 2832658 4783305 ~ 4785631 (+)

Expression


Co-expression Network