CI01180000_03223456_03224643 (LCLAT1)


Basic Information

Item Value
gene id CI01180000_03223456_03224643
gene name LCLAT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3223402 ~ 3224643 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03223456_03224643.mRNA
ATCATTAATAGACAGTGAGCTCTTTCTTTCATTAACCCCGTTGTTTTGTGACGCCATGGAAAAAGGTAATGATGTGAGTTCATTTGGCTGTGAATTCGTGTGCAGATGGACACGAACGGGATCGAAGTCTTCTGCGTTTCCATCGTCCTTCAGCACGTTCGGCTCGTCTCAGATAGATGTTAGCAGTTCTCTGATTCAGTGTGATCTGATGATGACGGTGTCCGTCAGAGGCCTGTATTTCCTCATCACTCTGTTCCTGGGCAGTTTCTTCGGCAGCATCTTCATGTTGGGTCCCGTTCTGCCGCTCATGCTGCTCTCGCCGGCCTGGTATCGCTGGATCACGGACCGCATCGTGGCCACATGGCTCACCCTACCGGTGGCGCTACTGGAGCTGGTGTTCGGGGTGAAGGTGGTCATAACGGGTGACGGCTTCATTCCCGGCGAGCGCAGCGTCATCATCATGAACCACCGTACACGTCTGGACTGGATGTTCCTGTGGTGCTGCCTGCTGCGCTACAGCTACCTACGTCTGGAGAAGATCTGCCTGAAAGCGGCATTGAAGGCCGTGCCCGGGTTCGGTTGGGCCATGCAGGTGGCCTCCTTCATCTTCATCCATCGCCGCTGGGAGGAAGACCGCAGTCACATGTCCAACATGCTGCAGTATTTCTGCCACATCAAGGAGCCGCTGCAGCTGCTGCTCTTCCCCGAAGGCACCGACCTCACC

Function

symbol description
lclat1 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Acts upstream of or within endothelial cell development and hemangioblast cell differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hematopoietic stem cell. Orthologous to human LCLAT1 (lysocardiolipin acyltransferase 1).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG:

id description
K13513 LCLAT1, AGPAT8; lysocardiolipin and lysophospholipid acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03223456_03224643.mRNA True 724 mRNA 0.55 4 3223402 3224643

Neighbor

gene id symbol gene type direction distance location
CI01180000_03210894_03214195 LBH coding upstream 8682 3210894 ~ 3214720 (+)
CI01180000_03149731_03154047 NA coding upstream 69314 3149047 ~ 3154088 (+)
CI01180000_03077007_03078238 NA coding upstream 144603 3076607 ~ 3078799 (+)
CI01180000_02998131_03010201 NA coding upstream 212899 2998131 ~ 3010503 (+)
CI01180000_02951792_02968343 STK32C coding upstream 255059 2951792 ~ 2968343 (+)
CI01180000_03250547_03255754 KLHDC3 coding downstream 25904 3250547 ~ 3255868 (+)
CI01180000_03280581_03284614 NA coding downstream 55705 3280348 ~ 3284621 (+)
CI01180000_03286578_03289266 NA coding downstream 61420 3286063 ~ 3289303 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding downstream 200871 3425514 ~ 3444183 (+)
CI01180000_03447461_03475999 TRIM8A coding downstream 222701 3447344 ~ 3476102 (+)
G680317 NA non-coding upstream 43836 3123791 ~ 3179566 (+)
G680424 NA non-coding upstream 53946 3165488 ~ 3169456 (+)
G680331 NA non-coding upstream 171377 3051549 ~ 3052025 (+)
G680349 NA non-coding upstream 255645 2966958 ~ 2967757 (+)
G680309 NA non-coding upstream 319238 2903841 ~ 2904164 (+)
G680705 NA non-coding downstream 162584 3387227 ~ 3387686 (+)
G680706 NA non-coding downstream 163645 3388288 ~ 3388573 (+)
G680767 NA non-coding downstream 224442 3449085 ~ 3460969 (+)
G680797 NA non-coding downstream 277466 3502109 ~ 3502348 (+)
G680743 NA non-coding downstream 292982 3517625 ~ 3524426 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 527966 2689271 ~ 2693221 (+)
G679324 NA other upstream 826042 2388867 ~ 2397360 (+)
G679076 NA other upstream 1423969 1795170 ~ 1799433 (+)
G678946 NA other upstream 1667251 1518353 ~ 1612547 (+)
G678637 NA other upstream 2067730 1149551 ~ 1155672 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 328634 3569165 ~ 3573135 (+)
G680736 NA other downstream 541048 3765691 ~ 3784441 (+)
G681137 NA other downstream 1558662 4783305 ~ 4785631 (+)
G681268 NA other downstream 2145767 5370410 ~ 5373762 (+)
G681592 NA other downstream 3248392 6471995 ~ 6478999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006302 lclat1 coding NC_007124.7 CM002897.2 51956397 ~ 51963460 (+)
bowfin (Amia calva) AMCG00004058 NA coding CM030121.1 CM030121.1 30924788 ~ 30928491 (+)