CI01180000_03280581_03284614


Basic Information

Item Value
gene id CI01180000_03280581_03284614
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3280348 ~ 3284621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03280581_03284614.mRNA
ACTATATAAGACACGAGAGACTCGCGGATCATCACACACTCACACTCACACACAGCGGTCAGAGGTGAGGCGAGCTCTACAGCAGCTCCACTACCACCAACTAACCCTAACTATACTAATACTGACCTGTCATAGGAATCCTCGCGGTTTATATGTTTTGCACGTTATCGATGTTTTTTCTTTTTCAGCTGTTTAACATGGGCTCTTTTTGCTTTGCTTCAGATCTCAGTGAGGATGAGCGTCAGCTGCGACACGAGCATCAGACGGAGCCTCCGCGCCTCTAAACGCTTCAGGTCCACAAAAGGGGCGTCCAAAGCCCGGCGAGACCACATCAATGCCGAGATCCGGACTATGCGGGCGCTGCTGCCCATCGGTGCTGAAGAGCAGGAGCGTCTGTCGTACCTGCACTCCATGTCGCTCATCTGCACCTTCATCAGGAAGACTGTGCTGCTCACAGGTGTTCATGAGGACGGCAGCGATGTTTCTCCTCTGAACGAGAGCTTTCTGCAAGCCTTGCCTGGGTTTATTGTTGCTTTGAACAAAGACGGAAAACTGGTGTACGTGTCTGAAAACGTGGCAGAATATCTCGGCCTGTCAATGGTCGATGTCCTTCAGGGAGACACTTTCTATGATATGATGGACGGTCGCGACGCTGAAGCGCTGAAGCTCGTTTTGAGAGATCCGGACGTCTCAGCAGAGAGGAGTTTCGTGTGCCGTATGCTCACCTCCAAAGCCTTCCGGCTCCAGTACGGCAGCTGCTGCTCCATGCTGGTGAAGGGACGCTTCCAGAGCTCCTCTCTGTTTGTGGCGCTCTGTACGCCCACGGCCGACAGACTGCAAGACCGCCAGCTCCTCCACGCCTCCGGCTCCTTCCACACGCTCCACCGGCCTGACATGAGCCTCACTCACGCCCCCTACAGTGTTTTGTTCCACCTGGGTTTCTCAGCAGAGGAGCTGATTGGTCGATCGTGGTACGACCTCCTGCACCCTGATGACCTCACGCTCGCCGCCCGCTGCCACACGACACTCGTACGAGATGAGGGCGACACAAGTGCAGAGATGCTGGTCAGACTGCAGCGGAAGGATCTGTCGTGGATCTGGCTCTACGTTTGTGCAACTGCGAAAGCAGCCAAAGAATCGATCGCCTGCACAAACCACGTCATCAGTGAAACAGAAGCCATCTATCTCAAAGACAAGCTCTACGGCAGCGTGTCTCCGTCTGTCTGCGGTGCTCAGGTGTCTCAGGGTCCCGTCTGCTTGCCGGAGATGGCAGGACAGATCCCGAGCAGAAGCAGGAGGAGCTCAGAGACGGGCGATGTGCAGATCAGAAGCTTCTTCTCCACGCCGCCCTACAGCCCCACTTCCTCTCACTCTTCTGACTTCCTGTCTGAAGGCTATGGCTCTTTTGAGCACTTGGTGTGCGGCTCACGCTTCTGCCCTTCTGAAGTATTCCCAGTGTCTCAGCCGTACCCTGACGCTCCTCCTAATGTAGGTCTGCCCGACGCTCACCGCGTCCCCGTGTACCAGCCGGTGCTGGACGCGAGCGAGGGCCCGTCAGACTGTGTCCTGCATCAGGAGGACTTCATGTTTGCTCAGGACAGCGTGCCGAGTCTGCTGACGCCGGAGCCCTCACCCTCAGCAGACGGACGCTTCCTCTTCAGCCAGACGGAGCAGGTGGAGGTCGGAACGCTGGCCCATCAGATCCGCTCTCTGGCCAGCAGCTTCAGTCGACACACACAGCACGATGGCACCCTCTGCTGGACGCCTGAGCCGCTGCTGGACGAGAGAGTCATCGACAGCATCCTGCGCGATCTGGACGCGGCCTCGGCCAAAAACACGGACTGCGTGTGGAACGGGCTCCCGGTGGCTCCCGTGGCTGTGGAGCCGTTCATCAGCGCGACACACACCAACACCGAGTTGCATCAACTCCATCACTGTCTGTACGCCGGCATCCATTAAACGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03280581_03284614.mRNA True 1965 mRNA 0.57 8 3280348 3284621

Neighbor

gene id symbol gene type direction distance location
CI01180000_03250547_03255754 KLHDC3 coding upstream 24480 3250547 ~ 3255868 (+)
CI01180000_03223456_03224643 LCLAT1 coding upstream 55705 3223402 ~ 3224643 (+)
CI01180000_03210894_03214195 LBH coding upstream 65628 3210894 ~ 3214720 (+)
CI01180000_03149731_03154047 NA coding upstream 126260 3149047 ~ 3154088 (+)
CI01180000_03077007_03078238 NA coding upstream 201549 3076607 ~ 3078799 (+)
CI01180000_03286578_03289266 NA coding downstream 1442 3286063 ~ 3289303 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding downstream 140893 3425514 ~ 3444183 (+)
CI01180000_03447461_03475999 TRIM8A coding downstream 162723 3447344 ~ 3476102 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 coding downstream 284544 3569165 ~ 3573135 (+)
CI01180000_03590508_03607430 GABRA2 coding downstream 305887 3590508 ~ 3607775 (+)
G680441 NA non-coding upstream 333 3213013 ~ 3280015 (+)
G680317 NA non-coding upstream 100782 3123791 ~ 3179566 (+)
G680424 NA non-coding upstream 110892 3165488 ~ 3169456 (+)
G680331 NA non-coding upstream 228323 3051549 ~ 3052025 (+)
G680349 NA non-coding upstream 312591 2966958 ~ 2967757 (+)
G680705 NA non-coding downstream 102606 3387227 ~ 3387686 (+)
G680706 NA non-coding downstream 103667 3388288 ~ 3388573 (+)
G680767 NA non-coding downstream 164464 3449085 ~ 3460969 (+)
G680797 NA non-coding downstream 217488 3502109 ~ 3502348 (+)
G680743 NA non-coding downstream 233004 3517625 ~ 3524426 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 584912 2689271 ~ 2693221 (+)
G679324 NA other upstream 882988 2388867 ~ 2397360 (+)
G679076 NA other upstream 1480915 1795170 ~ 1799433 (+)
G678946 NA other upstream 1724197 1518353 ~ 1612547 (+)
G678637 NA other upstream 2124676 1149551 ~ 1155672 (+)
G680736 NA other downstream 481070 3765691 ~ 3784441 (+)
G681137 NA other downstream 1498684 4783305 ~ 4785631 (+)
G681268 NA other downstream 2085789 5370410 ~ 5373762 (+)
G681592 NA other downstream 3188414 6471995 ~ 6478999 (+)

Expression


Co-expression Network