CI01180000_03286578_03289266


Basic Information

Item Value
gene id CI01180000_03286578_03289266
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3286063 ~ 3289303 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03286578_03289266.mRNA
AATATAAAAAACTGAAAATCGCTGTAAAATATCACATCAATATACATTTGAGAAAAGTACATAGGACATATGCCCAGTGACCAGTGTTTGGGAAAGTTACTTTTAAAGCTAATGCATTACAATATTGCGTTACTCTCTAAAAAAGTAATTGCATTAGTTACTTTTTATGGAAAGTAATGCTTTACATTACTTTTGTGTTACTTTTTCTCACCTGAGCTGGGCTTGCTTGTTTGTTTGTTTTTTAATAACAACAAAAAAGTTCTATTTTTGGCAAATTTAAAGGCCCTTTAACACCAAATTTGAAATGGATAAGCTTCAGGCTGATCACAAATGTGATGTTGCCACTATGATCCGCGCGCAGCTTCACTTTCTCCCGTTAATGAACCAGCTTGCAAATGTCAAATATAATATAAATATAAATAATAAATGTATTTGTATTGCATGTTCAGTTTTAATCTAAAGAAACAGCCTAGGTCTCCAGTCACTCAAACTCGTGTGTTCCATTGTAACGTCATAATGATCGCCGCATTCCATAGAACGTTCGGGATTGAGGATCTGAATTTTAATGTTTTCATAACTCTGAGAAAAATTTTGCTTAAACAGTGGAATGTTATTGTCTCGGTTTACTGCACATTTAGTGATGCATCTGAAAAGGCTCAGAGAAGGTTCCAGCACTCAGGCTTCTCAGATGCAACACTGAAGACCACAAAGCAGTGGAGGCAGAAGACGATGCAGGGAGCACCCTTTTCTGCCAAGTCCAAACAGGGAGCACCTGTCCCTGCCATGGCCAAACAGGAAGCATCTGTGCCTGCAAGTTCTGAGAAGGGGGACCTCACCTCATCCCTGGTATTCAGTGATTCATCTGAGAAGCCCCCGAACTTATCAGACTTATCAGATGCAACACTCAAGACCATGGAGCAGCAGAGAAAGCAAAGAAAGAAAAAGCGTCAGGGACAAGCTAAGGCTGCTGGGTCTGAGAAAACTGAGGGGGGAAACATCATCTCATTTCCAGTCTTCAGTGATGCATCAGAGAAGGCCATGAAGCAGCTCAAAGAAGCACCTGTGCCTGTTGGGTCCCCACAGGGAACACCTGTGCCTACTGGGTCCCCCCGGGGACCACTCCCCAGGTCCCAACAAAGGGCATCCAGCATCTCTGGGCATCTGACTAATTGTCTACAAAAGGCCTCTTTTGAACAGGGAGCACGTATGTCCTCCGTGTCCCCGCAGAAAACACCCTTGCCCGCCAAGTCTCTACAGAGAGCACCTGTGGCTGCCCCAAAGGTGCTTGCATGCTCCCCACATGGAGCACCCATGCCAGAAAAGATCCCAGACAGACGAAAACTAAAGATCCCAGAGCGACTGAGGCAGGAGGCTTCTCTTCAGGGAGCACCCATGCCAGACAAGATCCCAAACAGGCAAAAACTGAAAATCCCTGAGCTGTTGAAACGGGAGCTGCTGCAGCAGAAGCCACTAGCCTCTCCTCTGAAGACAGCACCTGTCAGTTGTGCACAGGTGGCACCCGTTATTGACAAGATCTGTGAAAAGAGAAATCTTAAAAACTCAGAGCTGCCGAGAAAGGAGCTGCTGGAAAAGGATGCAATTATACCAGACACAACCCCGGACAATGCAGATCTGTGTCAGTCACCTTCACAAAAACTATGTGTGGAGATTGACAACCTAATTGAAAAGGTGCAGCTGATTCTTAAACTGGACAGCGACAACCATCAAGCCTCTCTGATACCCACTTCACAACTGAACCAAGGAACTCAGAGCAGCCTTCAGCCCTGGAAAATAGCATTGGACAATGCAGGTGTGGACCAGTCACTCCTGCAAAAAAAGCAGCCTATGGAAATCAAAGTCGAGGTCCAACAGTCGGAGCCAGGCAGCTTAGATCAAATGGACTATTTATGTAGCATGTTCGCTAAATGTTGTGTAATTTCAGATATTTAATATCTATATTGTGTTTGCACATGCTATACGAATGCA

Function

NR:

description
hypothetical protein cypCar_00007333

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03286578_03289266.mRNA True 1986 mRNA 0.45 5 3286063 3289303

Neighbor

gene id symbol gene type direction distance location
CI01180000_03280581_03284614 NA coding upstream 1442 3280348 ~ 3284621 (+)
CI01180000_03250547_03255754 KLHDC3 coding upstream 30195 3250547 ~ 3255868 (+)
CI01180000_03223456_03224643 LCLAT1 coding upstream 61420 3223402 ~ 3224643 (+)
CI01180000_03210894_03214195 LBH coding upstream 71343 3210894 ~ 3214720 (+)
CI01180000_03149731_03154047 NA coding upstream 131975 3149047 ~ 3154088 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding downstream 136211 3425514 ~ 3444183 (+)
CI01180000_03447461_03475999 TRIM8A coding downstream 158041 3447344 ~ 3476102 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 coding downstream 279862 3569165 ~ 3573135 (+)
CI01180000_03590508_03607430 GABRA2 coding downstream 301205 3590508 ~ 3607775 (+)
CI01180000_03610257_03623051 GABRG1 coding downstream 320117 3609420 ~ 3624142 (+)
G680441 NA non-coding upstream 6048 3213013 ~ 3280015 (+)
G680317 NA non-coding upstream 106497 3123791 ~ 3179566 (+)
G680424 NA non-coding upstream 116607 3165488 ~ 3169456 (+)
G680331 NA non-coding upstream 234038 3051549 ~ 3052025 (+)
G680349 NA non-coding upstream 318306 2966958 ~ 2967757 (+)
G680705 NA non-coding downstream 97924 3387227 ~ 3387686 (+)
G680706 NA non-coding downstream 98985 3388288 ~ 3388573 (+)
G680767 NA non-coding downstream 159782 3449085 ~ 3460969 (+)
G680797 NA non-coding downstream 212806 3502109 ~ 3502348 (+)
G680743 NA non-coding downstream 228322 3517625 ~ 3524426 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 590627 2689271 ~ 2693221 (+)
G679324 NA other upstream 888703 2388867 ~ 2397360 (+)
G679076 NA other upstream 1486630 1795170 ~ 1799433 (+)
G678946 NA other upstream 1729912 1518353 ~ 1612547 (+)
G678637 NA other upstream 2130391 1149551 ~ 1155672 (+)
G680736 NA other downstream 476388 3765691 ~ 3784441 (+)
G681137 NA other downstream 1494002 4783305 ~ 4785631 (+)
G681268 NA other downstream 2081107 5370410 ~ 5373762 (+)
G681592 NA other downstream 3183732 6471995 ~ 6478999 (+)

Expression


Co-expression Network