CI01180000_03610257_03623051 (GABRG1)


Basic Information

Item Value
gene id CI01180000_03610257_03623051
gene name GABRG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3609420 ~ 3624142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03610257_03623051.mRNA
GCTTTAAAAAAAAAAAAAAAGATAAAAATCCAACCACAAAAACGCCAATATTTTGCTTGTGAAGGGAGGTCGCGTTTGTCTGAGGTAAGTAACCATAGCAACCATAGCAAGCACAACAGTAGCTATTGCCATCATTTGAACACATGATCATACATTATTAAATGATTAAAAATAGTAGCCAACAAACTGGTTTGTTTGCCGTCTTTAAGGTTAGTTAACTGTGTTAGGGGAGGCAAAAGATTCTACAGGAAATTGAGAGGAAATTACTGACAGAAATTCCTTTAAAAAGCTCACTGAACAATTCTCTCTCTCACACACACACACACACACACAAACAATCAAAAATTACACTATAATAGGCTAAGTTTACCCCCTTTATACACAGGGTTAAGTATGGTCACAATCATCTTGGTGCAGCGCCTCTGAAAATGTCGCATTTGTCACTTTATTAATCCCCAACAACAGCAAAACTAAGTAAAGGTCTCATAAATCACCGCTTGATGTGAATTCTCTTAGGTAGAGCAGTCAGCTCTTTTCCTACAGGCAGTTTCTAATAATTCCCGGAACACTGAGAGCGTCGGTCTCACTCAGCAGAACGCTGGATGAACACAGCAAAGCGGCGGTGCCGCAATCAGCGAAACCCCGCATTCACCATTCTCATCCACACCGCGTCTGCTGCCTGACAGAAACTATAGGCTCAAGCTATATGCGTTTGTCTAGACAACAACTGACAACATACGTTGACGCTTTCACTTATCGTTTAACGAATCGCTCGAAAAAGGTTTGATCATCTTTAAGCTCCAAATCATCGTTTGGTTATAAACCGAGCGTTCGCACAATGGTTCTGCTGCATCGCCGCCGGAGAAAAGAAGCACTGGTTTGGCTGTTGCCCGGTCTGCTTGGAGTCTGCATGGCATTTGGCCCAAGCAAAGCAGAGGAGGAAGATTATGAGGATGTCCCCATAAATAAAACATGGGTTTTATCACCAAAGGTCTACGAGAGCGACGTCACCCTTATCCTAAACAAATTACTGCAAGGTTATGACAACAAACTGAGACCAGATATCGGAGGCAAGTCACTTTTTGGTTATCCAGGCCCACACAGAAGGATTTTGCTGATGTTTTTCTCTTCGCCAGAGCTGTACAAGTCACTTTATTCTCAGTACATCAGTGTTCTGGAAGCGACGCAGCTGACTAGAGTTCAGTTATTTAAGAGGATTTATCTCAGTGGTGTTCAGGAGTACACCATCGACATCTTCTTTGCTCAGACGTGGTACGACAGCAGACTGAAATTCAACAGCTCAATGAAACTCCTCATGCTCAACAGCAACATGGTGGGAAAAATCTGGATCCCTGACACGTTTTTCCGTAACTCTCGTAAATCTGATGCCCACTGGATCACGACACCGAATCGCCTTCTGCGGCTCTGGAGCAATGGAAGAGTGATGTATACTCTAAGGTTGACTATTAATGCGGAATGCTACCTTAAGCTGCATAACTTTCCCATGGATGAACATTCGTGCCCTCTGGAGTTTTCAAGCGATGGGTATCCAAAGAATGAGATCCAGTATAGATGGCAGCGTCGTTCGGTTGAAGTTGCAGACCAGCGGTACTGGAGGCTTTACCAATTTGCCTTTGTGGGCCTACGAAACACTTCTGATGTGGCAAACACTCAGTCTGGAGAATATGTGGTTATGACTATTTTCTTTGACCTGAGCCGGAGAATGGGCTACTTCACCATCCAGACCTACATCCCCTGCAGTATGATTGTGGTTTTGTCCTGGGTCTCTTTCTGGATTAACAAGGATGCTGTACCTGCCAGAACATCTTTAGGAATCACAACTGTGCTCACCATGACAACCCTAAGCACCATATCGAGGAAGTCCTTGCCGAAGGTGTCGTACGTGACAGCCATGGATCTATTCGTGTCTGTCTGCTTCATCTTCACCTTTGCTGCTCTTATGGAATATGGGACTCTACATTATTTCACAAGCAATCGACAGAACAAGAAGACCAAATCAAGCCATGCACAGAAACCCAGCATGGTTAACATCAGACCAGGGACATCTCTGCTGCAGATGAACAATATTGCTCCCTACCATGAGGATGATGATTATGCGTATGAATGTCTGGACGGGAAAGACTGTGCCAGTTTCTTCTGCTGCTTTGATGATTGTCGCTCCGGAGCTTGGCGTGAGAACAGAATGCATGTCCACGTCTCCAAAATCGACTCCTACTCCCGAATATTCTTCCCAACCGCCTTTGGCCTCTTCAATCTTGTCTACTGGATTGGATATCTGTATCTTTAAAGATGCTTGGCAAGTGGGAGAGGGACTCAGTTCTAGTAATATTCGCAAATCATCTGTAAATTCTCCATCTGCTAAATCTGGCAGCATAAATCTTTGAGAGAAGGGGACGTGTGAGGCTTGAGTTGGATGTATTAATACTTAATGTGTCTTTAATTGTACATGAGATGTGATTTATTGCAGGATTTGAATCTTAGAAGGACAATGTATTGATGCCAAGAGAAGGAAGGAAATGCTAACAGTTCGATTGTTCATCAACTACACACGCCATATCAAACAGATCTCATCTACGTTGCCTAGTTTAAAATGATCTCTTAAATATCCACCAAAATATCTGCAGAATTTTTTTTGAACTGCAATATTAGCATCACTAATGCAACTATGTTAACTTCAGGTTATTATCTCTCTGGCTGAAGCATAATATGATTATTTGCAATGAAAAGTAGATATGATATTAGTCGTTTCGGATACTAATTTATAGCTAGCTACATGTCAGAAAACTAATATTTACATATGATAATCTCTGTTTTTATTTCAAACTTAAAGTAGCTACATTTCTGTGTGAATTACCTGCATTCAGTTGAGTACTAAACAAACCAAAGCATAGATATCTGAAGGTTACATGAATAGAATTTTGTTTTCTGCTCAAGAATTACCCAGAAGCCATTTACCTGGAATTAGCCTATAATTATACTGTGAAATGTTCTTGACTTGAACTAATAAGCTGTCTCTGCAATAGATGAAACAAAGAAATGCCAATGTGCCCAAGATAAAAGGGTTCATGTGTTTTTTTATATATCGAACAAAAGGAACAGAGCAGCCTTTACAATGCACAAATGTTCAGTGTCCTTTAGTACAAATTAGAATTCATCACTCTCTTGCGCATTCAAGACATCTCCTTGCGAATGGCTAGATTTCTGTGAGCGTAATTGCATGACTCATCTGAGCTCCTACGGCTAATCAACCCATATTTGGAAACCAGTCTGATGGACTTTCTTCAGCAGAAGAGCTCTAGACAGACGAGTATCAAATCTAAAGCATTTGAAAACATACAGTCTTCATAACACAAACCATGGATGCCTTCTCTGTTGGT

Function

symbol description
gabrg1 Predicted to enable GABA-gated chloride ion channel activity; inhibitory extracellular ligand-gated ion channel activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in cerebellum. Orthologous to human GABRG1 (gamma-aminobutyric acid type A receptor subunit gamma1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05186 GABRG; gamma-aminobutyric acid receptor subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03610257_03623051.mRNA True 3398 mRNA 0.41 9 3609420 3624142

Neighbor

gene id symbol gene type direction distance location
CI01180000_03590508_03607430 GABRA2 coding upstream 1645 3590508 ~ 3607775 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 coding upstream 36993 3569165 ~ 3573135 (+)
CI01180000_03447461_03475999 TRIM8A coding upstream 133318 3447344 ~ 3476102 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding upstream 165237 3425514 ~ 3444183 (+)
CI01180000_03286578_03289266 NA coding upstream 320117 3286063 ~ 3289303 (+)
CI01180000_03663974_03689344 GABRB1 coding downstream 39294 3663436 ~ 3689472 (+)
CI01180000_03701881_03732121 ATP10D coding downstream 77327 3701469 ~ 3732123 (+)
CI01180000_03741295_03752345 DAPP1 coding downstream 116354 3740496 ~ 3752640 (+)
CI01180000_03757478_03765413 RRH coding downstream 131548 3755690 ~ 3765666 (+)
CI01180000_03798341_03812950 METAP1, AMPM1 coding downstream 173632 3797774 ~ 3813051 (+)
G680816 NA non-coding upstream 4315 3604748 ~ 3605105 (+)
G680815 NA non-coding upstream 4802 3604047 ~ 3604618 (+)
G680805 NA non-coding upstream 59137 3550021 ~ 3550283 (+)
G680743 NA non-coding upstream 84994 3517625 ~ 3524426 (+)
G680823 NA non-coding downstream 15925 3640067 ~ 3640356 (+)
G680824 NA non-coding downstream 17318 3641460 ~ 3641755 (+)
G680825 NA non-coding downstream 17745 3641887 ~ 3642106 (+)
G680831 NA non-coding downstream 28596 3652738 ~ 3653016 (+)
G680721 NA non-coding downstream 50150 3674292 ~ 3825843 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 913984 2689271 ~ 2693221 (+)
G679324 NA other upstream 1212060 2388867 ~ 2397360 (+)
G679076 NA other upstream 1809987 1795170 ~ 1799433 (+)
G678946 NA other upstream 2053269 1518353 ~ 1612547 (+)
G680736 NA other downstream 141549 3765691 ~ 3784441 (+)
G681137 NA other downstream 1159163 4783305 ~ 4785631 (+)
G681268 NA other downstream 1746268 5370410 ~ 5373762 (+)
G681592 NA other downstream 2848893 6471995 ~ 6478999 (+)
G681686 NA other downstream 3008766 6632908 ~ 6634989 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017878 si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522 coding CM030131.1 CM030131.1 26642382 ~ 26650068 (-)