G679050


Basic Information

Item Value
gene id G679050
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2121269 ~ 2127987 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799738
ACTAACCCTTTGATTGGTGATAAGCACTGAATTTACATAAAGTCATTATGCAGAAGTTACACAAAAATGATATGAATTTGGATAGCTGATGTGCTACTTTTGATCATTTTTCCTGTGACACGCTGTTTTAATGACAGCGAGGAGTGATAGGGGCACAATAATTCCTCTTTAAACTAAACCACAGATCTCATGTTATGACAAAATATTTTTAGCGAGAATGATGATCGGTGATGCACACTTCAACAGACACTGCTGGATTCGGTGGATTTTTTTATGGGTGTTTTGATATATTTATTCTAAAACATAACAAGGATATTGGATGATTTTTAGCAATGTAATGTGTATGGCACAAATGGCATTTATAGTCTGTATCAATATTTTCCACTGTCTTGTACCTTTGATGGTGTCACTTGGATGGGAATATGCATGGAAATGATATGCAGATGAGGTTATGCATAGTAAAACTGGGCGTTGTAAGCTCCATATATGGTAATTTCGGGGAGGAGACTGGGTGGAGATGCACCTACGCACAATCTTCTGCTGACTGGGATTTATAATGGGATTTTTGCGCAGGTTCTGGCATACGCATGGTTTTATAAATCTGAAAACTTTTGTGCGTACGTGCACTTTTAGGATGAAGTCTACGGAAAGTTTTATAAATGAGGCCCCTGGTCTTTAATAATGTTCTCAAAACATTAGCACAAAAAACATTATTTTTGAATGTTCAGAGAACATTTAGAAATAAGGTTTTTATAACTTAATGGGAACGTTAGAACATATTTTTGTTAGCTGGGTAGTAGTCATTTTTTGTTTGTTGTTTTGGCCTTGCCCATTCCTGAAGCTAACTTCCATACATTTGTTAAAAATTGTTGCATCTTTTGTGATTTATCTTGAGTATTGGAGCCAAATTAATTTAATATTACTTACTTACTCCAACTTAGATTGGCATAGGCATGACAGTGAGTCTTGACCCTTTGACAAATGATCATTTCTAAACTTTAAAAGTTTACTTTACTCTTGATTTTGTCATGTTTTTGAAGTATGCCCTGATTCTGCCTCTGTCCCCCAGAGTGGAATATATTAAGCTTTAATTTAGGACCTTATTTTAATTTAAATTTATTTCATTGAAATGAGACTCCGCACAAAGATCTTATTTTTTTGTCCTTAGAGATTTTAAGATAATGAAGGAGGTTGCTTGTCTGGCGCTTTGACAAGGTGATGTGTAAAGGACAGTCTGCGCTCACAAATATGATAGATATGAAATACCAACTGATGAAGGCCTCTGATAAAGGAGCCTCAAGCCTTTTATAAACGTTGCCCTTACGAAACAACCGTCAAAACATGCTGCAAATATCACAGGGTGGCGAAAGCATAAAAAGCATATTGATGTATATGATTGGCCAACCTTTCAGTAGTCAGAGTGCACGTTTTTAGAAATTGTTTCCTGCTTCATTTGCAGTCACAAATAGTGTGTCTAATGGTGATTCAGAGTAAACAAGAAGTAAATCATCCACGTTGGTCAGATTAAGCCATTAGCTCACCGGCTGGAGTTAAATGTAGAGAAATGACTCATTTAATGTCTGATTACCAAATAATAGAGTGCCATAAACAATGGCCGACACTCTGCACCAGATGCTAATTCACCTCGCATTCCCGAGATAACAGCCTCTATCTTCACGGATAGGCGCTTAACGTACGCAGACGTGGACAGTTTTTTATTAAAGCGTGCACAATACAGTCTGTTTTGTTATTAAAAGACTTTTCTTTCTCGAGATGCGTCTTCATTATACTCGAGCAGGCTTCGTGCAGATAACGCTGCCTCATTTGCTCACAAACCCCTCAATTTTCCCACAGACGATAATGCAGCATCTTTCTTGCAGCCACTCGTATGACAAGAGCACACCGTCTCCGATGTGCTCGCTGGATTACAAAGGTTAATCATCAATTTGAGGCTTATTATGGCAAAATAGTAGCAAGACTACTCGAAACAGAATTGAAGCTGCCGGTAGATGGAACAGATATAATCGACCGGGCTGAGAACACACAGTCCAGTGTAAATTGAAGTCCCTGTTGCATGATGATTAGAAGGTGTTTGATGGCTTAAACACATCTCTGTTGGATCATTGAAAATACACAGAGCAATCACGAGTCACTGGGCCATATTGATCGCGTTTTACTCCGACAGGAAGGACTCTGGTGAATTCTGTAGTAGCTTGGCAGAGAGAGCAGCACAGTGGGATTGAATCTTAGATTCTTGAAGATGATAACCACTATTACTAATGCCATTATTCAGGTTTAATTTAATGAACTGCATACATTTTATTCAGTTCTTAGAATGTGTTTTTTACTATTTTCTGGTGCTCCTATGTGAGTTTCTTGTTGGTGGTGTTTGCTGTCAGCACCAATCAGAGCATCTTAGAGATAAGCCCTGGCAACACCATAGTAACCACATAACAACGTTCGAAACACCACTCAGAACATCTTAGAGTTAAGCCCTGGCAACACCATAGTAACCACTTAGCAACGTTCTAAACACTACTCAGGAGATCTTTGTAACTGAAAAGCCTTGACAACATATAGCAACCACTTAGCAACGTTCTAAATACTACTCAAGACAGCTTAGTAACTGAAGAGGAAAGCCCTGGCAACACCATAGCAACCACTCAGCAACATTCTAAACACAACTCAGGACATCTCAGTAACTGAATCGATAAGCCCTGGCAACAGCATAGCAACCACATGGCAACATTCTAAACACCACTCAGGACAGCTTAGTAACTGAAGAGGTAAGCCCTGGCAACACCATAGCAACCACTTAGAAACGTTCTAAACACCACTGAGGAGATCTTAGTAACTGAAAAGCCTTGGCAACACCATAGCAACCACTTAGCAATGTTCTAAACACTACTCAGGACAGCTTAGTAACTGAATCGGTAAGCCCTGGAAACACCATAGTAACCACATAGCAACATTCTAAACACCACTCAGGAGATCTTAGTAACTGAAAAGTCTTGGCAACACCATAGTAACCACATAGCAACATTCTAAACACCACTCAGGACAGCTTAGTACAACAATTTGAACACCACTCAGAACCCCTTAATAACTAAATATCTACGCCCTGGCAACCACATAGCAACATCCTAGCAACATGGTGACAATGAACATCATCACATTATCTTCAGAAAACTCTACTGAAAAGACCGGCTTAGACCAGTGTGAATTTCCATGTTGGTTAATGCTGTTCAGTGATGATTGAGAACACATGCTGGTCTTTTCAACAGGGAATGTGCTTTACATTTATTTCCTCCACTGTGACTCGCGGTGCATTCAGGCTTTACATTTGATCAGTATGTGCGTGTTTTCTGTGAATCAAACCCATGACCTTGACATTAGTGCCGTGCTCTTATGAATAACTTATATATTTTGTGTCCAGTCATGCGTTGCAAAGCCTCAATGCATCTGCTGCGTGTAAATAGTTTCACATCATCATCTGCTTTGCGTTTCATTTCCTCAGTCCGCACAAAGTGGCCAATGTAAGCGCTTACTCATGGAAATGTAGTGGTTTAATCTGATGGATGTCAGTGACAGAGTTAGCATTATGAAGAGACCTCAGCTGGAGGCAGACGTTTGCTTTGCACATGAGCACCTGTGTTCATTACATAAGAGTCTGAACCATTTTATCAAAGAGCCTTATGGAAAGTGGATGCAGCTGTTTGCCGCCCGTCTTCCTTCGCTGAGCTCTATCCGCGCACAAGACCTCTTACAGTGATTTTCAGTCACATTTTCCACAGCGTGGCTCTCAGCAAGGCACTTGAAAAGAGCTTTTGAAGTAAGTATGTGTGTGGCACAGTGTCACTTTCTAGATAATTCTAATTCAGGTGAAGTAGAGCTTTGTTTTATGCCATGCATTGTTGGTCACAGCGTATGTCTTTCCTCGTATTGCTTTCTAGCTGGTTTAGTTATTGTTTCTTCAGGATGTTGCTAATAAAGCAAAGGTTTAGCAGGTTCACTAAGGATGCAAAGTGCAAGTGATGTTCTTCCTCGTTTTTTAATTCAAGACAACTTGAGATGCAAAATGGCATACGATAGTTTTTTTTCTAAAAAATGAATCAAAATTAAGTGAGTTTAAACATAAAACAAGTTTAAACTTATTTTTCTGACCCCATTAGCAGATATTTTTACATTTATTTTTACATTTTCAGAAAACAAAGCTTCCCATACTATGTTATTTTGCATCTCAAGAAAATGTATCTTGATTTAAAAATGATTTTAAAAATTCTTCTTTTTTTTGTTGGAGTGAGACGATTAAAATGTACTTTGTCCAGTTATTTCTGGTAGATACAGTAACATAACTATTTGGGAGAAAATTGTCTTTTTACTTTGATGGCCGTTTAAAAGTAGCCCCGTGTTCTGGCTGAATAACATTTTTGTTCTATGACGCATGAAATGAATGCTTATACAGTGTTAAGGATAATGCCGAAAGAACCATTCTGTACAGTAATGTCAATGTGTCATGCAAAGACTAGCGATTAATTCAAAGTATGGTCTCACATAGTCAGATCTATATAGTCTACAGTCTCAAATATACTTATAATCAAACTATCATAACAGTGTAATTTTAATTACCTCATCTGTCGACATAATACCGGTGTAGAGCTGCACGATTCAGGATAAATTGAAAATCACAATTTTTTTTTCACGATTCTGAACAGACAACTAATCAAAATAACATGTATGCTAATTTATTAGAGGTTCTGACAAAATGTTAATTGCTGCAGTCTATTTAAAATGTTTAATTAATTTGAATGAATTATTCAAACAAACAAAAAAATCAGTTTGAATGAATGAGTCAATGATGCACTCATGAATACTTCACTTGTTTCATTACTAAATGAATCAGGGTTCCTGAACAAATCTCTTGAATGAATGATTCAATGACTCACTCATACATACTTGACTTGTTTAATTAATGGATGAATCAGGGTTTTTGAACAAATCTCTTGAATGAATGATTCAATGACTCACTTATAAATACTTCAATTGTTTCATTACTGGATGAATCAGCGTTTTTGAACAAATCTCTTGAATGAATGATTCACTGACTCATTCATAAATATTTAGGCTTGTTCGAGATGCATCGGCACTGCGCAGACCAATCGGCATATGACATCAAAGTACCGCGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799738 True 5189 lncRNA 0.38 2 2121269 2127987

Neighbor

gene id symbol gene type direction distance location
CI01180000_01942458_01949580 NA coding upstream 170622 1942127 ~ 1950647 (+)
CI01180000_01915282_01926129 NA coding upstream 195000 1914892 ~ 1926269 (+)
CI01180000_01865632_01870994 NA coding upstream 250180 1865509 ~ 1871089 (+)
CI01180000_01832263_01834405 COX5B.2, COX5B2, COX5B coding upstream 286270 1832013 ~ 1834999 (+)
CI01180000_01828938_01830221 DNAJC12 coding upstream 290455 1828938 ~ 1830814 (+)
CI01180000_02158036_02158965 HS3ST1L1 coding downstream 29363 2157350 ~ 2159222 (+)
CI01180000_02322594_02323609 NA coding downstream 192365 2320352 ~ 2323752 (+)
CI01180000_02362001_02362428 NA coding downstream 233973 2361960 ~ 2363530 (+)
CI01180000_02541296_02567509 CFAP46 coding downstream 413309 2541296 ~ 2567783 (+)
CI01180000_02574027_02588521 NA coding downstream 446040 2574027 ~ 2588824 (+)
G679204 NA non-coding upstream 15176 2099698 ~ 2106093 (+)
G679202 NA non-coding upstream 22461 2098541 ~ 2098808 (+)
G679165 NA non-coding upstream 60258 2051527 ~ 2061011 (+)
G679160 NA non-coding upstream 90238 2030738 ~ 2031031 (+)
G679080 NA non-coding upstream 312129 1808882 ~ 1809140 (+)
G679228 NA non-coding downstream 69202 2197189 ~ 2201435 (+)
G679218 NA non-coding downstream 82802 2210789 ~ 2214934 (+)
G679047 NA non-coding downstream 110503 2238490 ~ 2241873 (+)
G679346 NA non-coding downstream 314288 2442275 ~ 2442571 (+)
G680148 NA non-coding downstream 444425 2572412 ~ 2572739 (+)
G679076 NA other upstream 321836 1795170 ~ 1799433 (+)
G678946 NA other upstream 565118 1518353 ~ 1612547 (+)
G678637 NA other upstream 965597 1149551 ~ 1155672 (+)
G678751 NA other upstream 1055178 1059843 ~ 1066091 (+)
G678440 NA other upstream 1969617 147934 ~ 151652 (+)
G679324 NA other downstream 260880 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 561775 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1425290 3569165 ~ 3573135 (+)
G680736 NA other downstream 1637704 3765691 ~ 3784441 (+)
G681137 NA other downstream 2655318 4783305 ~ 4785631 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G12458 NA non-coding CI01000000 null 19009595 ~ 19010099 (-)