G680705


Basic Information

Item Value
gene id G680705
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3387227 ~ 3387686 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801606
CAACGATACATCATCGTACTTTTATAGAAACAGGAATAAAAAGGATCTTGCTTGTAAGAAAGTGAGTGAGGAGGTCGGACAATTTGGTAAGTTGTAAAAAACGCTCTTTACTCAATTTGAGCTATATATATAGCCTATATACATATTGAGACTACAAGCTAGCTAAAGCCGGCAAATTGAGCTTATTCGCCGTATTTTACAACTACTTTCCCGCTGACGAGTTGATGTGTTTATTCAGAGGAAGTGTGCAGAAGCGAGACTGGAGCCGCCTGGCAGAAGCCCCTCTCATGATGCGAATTCGCGTCTGTTGTGAAGTGAATTTCACGCGCGAATGAAGCGAGTAAACTCAAAATGTTCAAGCGTCCAACTACGCGCGAATAGCGCGATTTGTTCGCGCAAGTCGCGTCTGGTGTGAACGCCCCATCAGACCAACCTCTGAGTACTTTATGAACATGCAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU801606 True 460 lncRNA 0.44 1 3387227 3387686

Neighbor

gene id symbol gene type direction distance location
CI01180000_03286578_03289266 NA coding upstream 97924 3286063 ~ 3289303 (+)
CI01180000_03280581_03284614 NA coding upstream 102606 3280348 ~ 3284621 (+)
CI01180000_03250547_03255754 KLHDC3 coding upstream 131359 3250547 ~ 3255868 (+)
CI01180000_03223456_03224643 LCLAT1 coding upstream 162584 3223402 ~ 3224643 (+)
CI01180000_03210894_03214195 LBH coding upstream 172507 3210894 ~ 3214720 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding downstream 37828 3425514 ~ 3444183 (+)
CI01180000_03447461_03475999 TRIM8A coding downstream 59658 3447344 ~ 3476102 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 coding downstream 181479 3569165 ~ 3573135 (+)
CI01180000_03590508_03607430 GABRA2 coding downstream 202822 3590508 ~ 3607775 (+)
CI01180000_03610257_03623051 GABRG1 coding downstream 221734 3609420 ~ 3624142 (+)
G680441 NA non-coding upstream 107212 3213013 ~ 3280015 (+)
G680317 NA non-coding upstream 207661 3123791 ~ 3179566 (+)
G680424 NA non-coding upstream 217771 3165488 ~ 3169456 (+)
G680331 NA non-coding upstream 335202 3051549 ~ 3052025 (+)
G680349 NA non-coding upstream 419470 2966958 ~ 2967757 (+)
G680706 NA non-coding downstream 602 3388288 ~ 3388573 (+)
G680767 NA non-coding downstream 61399 3449085 ~ 3460969 (+)
G680797 NA non-coding downstream 114423 3502109 ~ 3502348 (+)
G680743 NA non-coding downstream 129939 3517625 ~ 3524426 (+)
G680805 NA non-coding downstream 162335 3550021 ~ 3550283 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 691791 2689271 ~ 2693221 (+)
G679324 NA other upstream 989867 2388867 ~ 2397360 (+)
G679076 NA other upstream 1587794 1795170 ~ 1799433 (+)
G678946 NA other upstream 1831076 1518353 ~ 1612547 (+)
G678637 NA other upstream 2231555 1149551 ~ 1155672 (+)
G680736 NA other downstream 378005 3765691 ~ 3784441 (+)
G681137 NA other downstream 1395619 4783305 ~ 4785631 (+)
G681268 NA other downstream 1982724 5370410 ~ 5373762 (+)
G681592 NA other downstream 3085349 6471995 ~ 6478999 (+)

Expression


Co-expression Network