XLOC_017078 (CABZ01092781.1)


Basic Information

Item Value
gene id XLOC_017078
gene name CABZ01092781.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1996202 ~ 2035120 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034092
ATGCGTAAGGGGAAGGTGAACTTCCTGTGGGATGTGGGGTCAGGGGTCGGCCGAGTGGAATATCCAGATCTGATCATCAACGATGGAAACTGGCACCGAATCGAAGCCTCACGTATTGGTCTGAACGGCAGTATCTCAGTCCGTGCGCTCGAGGGACCCAAAACAGGCATCTTACCTTCACTCAGAAGTGCAAAAGCACCGGAGACCTACACTGTGCTGGACGTGGACCAGAACGCTTACCTGTTTGTCGGAGGCATGCTGGGATCAGTGAAGaaagcAGATGCTGTGAAAACCACCACATTCTCAGGCTGTATGGGTGAGACGTCTCTGGATGGAAAGCCCATCGGCCTCTGGAACTACAGAGAGAGAGACGGGGACTGTGCTGGATGTGTTGTCAGtcctCAGCCTGCAGACACTGAAGGAACGGTTCAGTTTGATGGAGATGGTTATGCGTCCGTCAGTCGCCCCACCAGGTGGAACCCAAATGTCTCCACTGTCATGTTCAAGTTTCGCACCTTCTCCACACACTCCGTCATCATGTACTTCGCCACCAAAGACATGaaaGACTTCATGAGTGCTGAACTGAGTGATGGCAGGGTGAAAGTGAGTTATGATCTGGGCTCTGGCACCGGCTCCATCATCAGTGATAAACGCTATAATGACGGCAAGTGGAAGTCCTTCACCATGTCCCGCATGAAGAAAGAAGCCACCATCACCATCGTCAACATGGACACTAATGAGAATGAGCGGCTGCTGATGGCGTCACCAGGGGGCGCTACAGGCCTTAACCTGCGAGACAACGAGCGCATATTTTTCGGAGGATTGACATTGCAAAACCTgagagAGGTGGTTTTGAAGAGGTTTTCTGGCTGTATGAAGGATATCGAGGTCTCCCGAACGCCATATAATCTGCTGAGCAGTCCAGATTACACAGGACTGACCAAAGGCTGCTCCATTGAGAATCTGCACACAGTGAGTTTCCCACGGGCCGGGTTTATGGAGCTGAATCCGGTGTCATTTGCCGTGGGCTCGGAGATCTCGCTCTCCTTCAGCACCAGGAGTGAAGACGGGCTGATACTGTTCGTGCACATCCCACGCCGCTCACGCAGACAGACCGGAGAgCTCAGTAAAGGGGCACTGGAGGTGCTGGTGTTCACCGGCTCCAGAAACCCTCGCAGAGTTTTCCGAAAACCAGATCAGGGAATCCTGCATGATGGCCGAGAGCACTCACTGCGCATCCAGAGGCTCCCGGGAGCATCCTTCACTGTGCAGGTGGACGAGGAGCCGCTGGTGCAGCAGCCCTTACCCAACGACCTCCCACTCAACATCCACCGCCTCTTCATCGGAGGAATCCCGCCTGATGTACAAACCGGCGTCCACAGGCCCAGCGTGCCGTTCGAGGGCTGCATCTGGAACCTCCTGATCAACACTGTCCCGGTGGACTTCTCCCAGCCTGTGGCCTTTGAGAATGCAGAGATTGGCCACTGCCCTGACCTGGCCCCGGCCCCAGCTCCGCCTCTTGAGGAGGTGGAAAAGGAAGAGGCTCCGCCTACACCAGCAGAAGCAGTTCGTCCTCCACCAGTGTCGTGCGCAGCAGAGGCGGAGCCTGCAGTGCTGGGGCTGGCCAAACAGTTCGGTCTGTCCAGAAACAGTCACATGAGCTTTGAGTTTGATGACAGAAAGGTGATGAACAGGTTGGTCATTGAGTTCGAGATGCGCACAGAGACAGACTCTGGTCTGGTTTTCTACATGGCCAGAATAAACCACGCAGACTTCGCCACCATCCAGCTGAAGGAGGGAATGGCTCACCTAAGCTTCGACCTGGGCAGCGGGAACACCTCCGTCAGCGTGCCGCGCATCATCAACGACGGGCAGTGGCACAAGATCCGTGTGATGAGAGACAAACAGAGAGGAGTCCTCACGATAGACGGCCGCTACAGCAAACACACCACCAGCCCGAAGAAAGCAGAAATCCTGGATGTGGTGGGAATGCTGTATGTTGGTGGTTTACCGCTCAACTACACCACCAAACGCATCGGCCCTGTGCTGTACAGTATTGACGCTTGCATTAGGAACTTCAAGATGATGAATCTGCCTTTGGATATGGAGAATCCCACCTCCAGCTACCGCGTGGGCTCCTGCTTTGCCAACCCAGAAAAGGGAAACTATTTCAATGGCACAGGCTATGCCAAAGCTGTGGAGGCATATCGAGTGGGTAATGACGTGTCAGTGGATCTGGAGTTCAGGACGGCTCAGAGCTCTGCTGTCCTGGTGGGCGTCAGCAGCCAAAAGATGGACGGGCTGGGCATCGAACTCGTAAATGGAAAGCTGTTCTTCCATGCTGATAACGGAGTGGGCCGCTTCACAGCCGTGCATGAGCCGAGGCAGGAGGCGGGGCTTTGTGATGGGCAGTGGCACACAGTCTCCGCCCACAAGCTGAAGCACCGCCTGGAGCTGACGGTGGACGGACAGAAGTCTGAGGCGGCGAGTCCAGACATCCGCTCGCCCTCCGCAGACACCAATGACCCACTGTATGTGGGCGGATACCCCGAGGGTCTGAAGCAGTTCGGGCTCACCATAAACACCCCGTTTAAAGGCTGCATGAGGAACGTGAAGATCAGTAAAGCTGGAAAAACTCTGCAGGTCCAGATGAACAaactgctggagctcagaggagtTCAGCCGCTCAGCTGCCCTGCTgcttaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110040

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034092 True 2706 mRNA 0.55 20 1996202 2035120

Neighbor

gene id symbol gene type direction distance location
XLOC_017076 lama2 coding upstream 16550 1903481 ~ 1979652 (+)
XLOC_017077 CABZ01103860.1 coding upstream 31379 1960092 ~ 1964823 (+)
XLOC_017075 CABZ01065423.1 coding upstream 104606 1834262 ~ 1891596 (+)
XLOC_017074 NA coding upstream 271154 1663759 ~ 1725048 (+)
XLOC_017073 C20H6orf58 coding upstream 575197 1412193 ~ 1421005 (+)
XLOC_017079 CABZ01088134.1 coding downstream 4398 2039518 ~ 2054547 (+)
XLOC_017080 BX681416.2 coding downstream 64123 2099243 ~ 2146546 (+)
XLOC_017081 l3mbtl3 coding downstream 99696 2134816 ~ 2206310 (+)
XLOC_017082 NA coding downstream 178569 2213689 ~ 2214421 (+)
XLOC_017083 tmem200a coding downstream 192740 2227860 ~ 2241954 (+)
XLOC_017070 NA non-coding upstream 640519 1354663 ~ 1355683 (+)
XLOC_017065 NA non-coding upstream 792328 1200292 ~ 1203874 (+)
XLOC_017061 NA non-coding upstream 1095822 896905 ~ 900380 (+)
XLOC_017056 NA non-coding upstream 1313910 681847 ~ 682292 (+)
XLOC_017084 BX681416.1 non-coding downstream 226813 2261933 ~ 2266612 (+)
XLOC_017085 NA non-coding downstream 246504 2281624 ~ 2284813 (+)
XLOC_017087 NA non-coding downstream 445790 2480910 ~ 2481815 (+)
XLOC_017088 NA non-coding downstream 471780 2506900 ~ 2508095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000135_01036648_01040176 LAMA2 coding CI01000135 null 1036513 ~ 1040176 (-)